Evidence map›Paper›PMID 16651382›Full record

ArticleThe Journal of cell biology2006

Competitive intra- and extracellular nutrient sensing by the transporter homologue Ssy1p.

Boqian Wu, Kim Ottow, Peter Poulsen, Richard F Gaber, Eva Albers, Morten C Kielland-Brandt

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Regulation of Amino Acid Transport in Saccharomyces cerevisiae.Microbiology and molecular biology reviews : MMBR · 2019
    Review
  10. Article
  11. Article
  12. Nutrient and Stress Sensing in Pathogenic Yeasts.Frontiers in microbiology · 2019
    Review
  13. Article
  14. Article
  15. Review
  16. The Lysosome as a Regulatory Hub.Annual review of cell and developmental biology · 2016
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Boqian WuCarlsberg Laboratory, DK-2500 Copenhagen, Denmark.
Kim Ottow
Peter Poulsen
Richard F Gaber
Eva Albers
Morten C Kielland-Brandt
Carlsberg Laboratory · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent studies of Saccharomyces cerevisiae revealed sensors that detect extracellular amino acids (Ssy1p) or glucose (Snf3p and Rgt2p) and are evolutionarily related to the transporters of these nutrients. An intriguing question is whether the evolutionary transformation of transporters into nontransporting sensors reflects a homeostatic capability of transporter-like sensors that could not be easily attained by other types of sensors. We previously found SSY1 mutants with an increased basal level of signaling and increased apparent affinity to sensed extracellular amino acids. On this basis, we propose and test a general model for transporter- like sensors in which occupation of a single, central ligand binding site increases the activation energy needed for the conformational shift between an outward-facing, signaling conformation and an inward-facing, nonsignaling conformation. As predicted, intracellular leucine accumulation competitively inhibits sensing of extracellular amino acids. Thus, a single sensor allows the cell to respond to changes in nutrient availability through detection of the relative concentrations of intra- and extracellular ligand.

Indexed as

Models, Biological2-Isopropylmalate SynthaseAlgorithmsIntracellular Signaling Peptides and ProteinsLeucineMembrane ProteinsMembrane Transport ProteinsMutationNuclear ProteinsPhenylalanineReceptors, Amino AcidRNA-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factors2-Isopropylmalate SynthaseIntracellular Signaling Peptides and ProteinsLEU4 protein, S cerevisiaeLeucineMembrane ProteinsMembrane Transport ProteinsNuclear ProteinsPhenylalanineReceptors, Amino AcidRNA-Binding ProteinsSaccharomyces cerevisiae ProteinsSSY1 protein, S cerevisiaeSTP1 protein, S cerevisiaeTranscription Factors

Identifiers

PMID16651382
PMCPMC2063833
OpenAlexW2100734428

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.