Evidence map›Paper›PMID 16649107›Full record

ArticlePlant molecular biology2006

The A and B loci in tobacco regulate a network of stress response genes, few of which are associated with nicotine biosynthesis.

Sarah K Kidd, Amanda A Melillo, Rong-He Lu, Deborah G Reed, Norihito Kuno, Kenko Uchida, Masaki Furuya, John G Jelesko

Abstract read
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In one paragraph

Article in Plant molecular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 37 citations in OpenAlex.

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  9. Tobacco nicotine uptake permease (NUP1) affects alkaloid metabolism.Proceedings of the National Academy of Sciences of the United States of America · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Sarah K KiddPlant Pathology, Physiology, and Weed Science Department, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061-0346, USA.
Amanda A Melillo
Rong-He Lu
Deborah G Reed
Norihito Kuno
Kenko Uchida
Masaki Furuya
John G Jelesko
Virginia Tech · USHitachi (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nicotine biosynthesis in Nicotiana tabacum is under genetic control by the A and B loci. Plants containing semi-dominant mutations at both the A and B loci (i.e. aabb genotype) have lower nicotine levels, reduced nicotine biosynthetic enzyme activities, and reduced mRNA levels of the corresponding biosynthetic genes. The A and B loci therefore appear to be coordinate regulators of several nicotine biosynthetic genes and define a group of co-regulated genes called the A-B regulon. To investigate the composition of genes in the A-B regulon, a fluorescent differential display (FDD) screen was used to randomly sample the transcriptomes of wild type and mutant aabb roots. This resulted in the isolation of 64 FDD clones, representing 49 unique genes or gene families. Four genes associated with nicotine biosynthesis were identified, whereas most of the other FDD clones were homologous with an assortment of stress response genes. Thirty-three genes or gene families showed reproducible aabb genotype effects, representing seven distinct mRNA expression patterns in response media treatments that increase the mRNA levels of known alkaloid biosynthetic genes. Thus, the A and B loci regulate the mRNA levels of some target genes differently than others. Eleven genes or gene families showed only treatment-specific effects, representing four mRNA accumulation patterns. These results indicate the A-B regulon is complex network of differentially expressed stress response genes, only a small subset of which are involved in nicotine biosynthesis.

Indexed as

AcetatesAlkaloidsBase SequenceCyclopentanesGene Expression Regulation, PlantGenes, PlantGenes, RegulatorGenotypeMolecular Sequence DataMutationNicotianaNicotineOxylipinsPlant Growth RegulatorsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerAcetatesAlkaloidsCyclopentanesmethyl jasmonateNicotineOxylipinsPlant Growth RegulatorsRNA, Messenger

Identifiers

PMID16649107
OpenAlexW2020643174

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.