Evidence map›Paper›PMID 16648643›Full record

ArticleGenetics2006

Genetic interactions between TFIIF and TFIIS.

Rachel N Fish, Michelle L Ammerman, Judith K Davie, Betty F Lu, Cindy Pham, LeAnn Howe, Alfred S Ponticelli, Caroline M Kane

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Differences and similarities in recognition of co-factors by Taf14.Biochimica et biophysica acta. Gene regulatory mechanisms · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Rachel N FishDepartment of Molecular and Cell Biology, University of California, Berkeley 94720-3202, USA.
Michelle L Ammerman
Judith K Davie
Betty F Lu
Cindy Pham
LeAnn Howe
Alfred S Ponticelli
Caroline M Kane
University of California, Berkeley · USUniversity at Buffalo, State University of New York · USUniversity of British Columbia · CA

Funding

Molecular Mechanisms of RNAPII TranscriptionR01GM051124 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI PONTICELLI, ALFRED S · 2000 to 2009
$1.9M
ROLE OF E1A IN INDUCING CELLULAR DNA SYNTHESISR01GM054014 · NIGMS · CLEVELAND CLINIC FOUNDATION · PI HARTER, NIKKI L · 1996 to 1999
–
GENETIC AND BIOCHEMICAL ANALYSIS OF YEAST TFIIBR29GM051124 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI PONTICELLI, ALFRED S · 1993 to 1997
–
NIGMS NIH HHS GM-51124NIGMS NIH HHS GM-54014NIGMS NIH HHS R01 GM051124NIGMS NIH HHS R29 GM051124
6 · The paper itself

Abstract

The eukaryotic transcript elongation factor TFIIS is encoded by a nonessential gene, PPR2, in Saccharomyces cerevisiae. Disruptions of PPR2 are lethal in conjunction with a disruption in the nonessential gene TAF14/TFG3. While investigating which of the Taf14p-containing complexes may be responsible for the synthetic lethality between ppr2Delta and taf14Delta, we discovered genetic interactions between PPR2 and both TFG1 and TFG2 encoding the two larger subunits of the TFIIF complex that also contains Taf14p. Mutant alleles of tfg1 or tfg2 that render cells cold sensitive have improved growth at low temperature in the absence of TFIIS. Remarkably, the amino-terminal 130 amino acids of TFIIS, which are dispensable for the known in vitro and in vivo activities of TFIIS, are required to complement the lethality in taf14Delta ppr2Delta cells. Analyses of deletion and chimeric gene constructs of PPR2 implicate contributions by different regions of this N-terminal domain. No strong common phenotypes were identified for the ppr2Delta and taf14Delta strains, implying that the proteins are not functionally redundant. Instead, the absence of Taf14p in the cell appears to create a dependence on an undefined function of TFIIS mediated by its N-terminal region. This region of TFIIS is also at least in part responsible for the deleterious effect of TFIIS on tfg1 or tfg2 cold-sensitive cells. Together, these results suggest a physiologically relevant functional connection between TFIIS and TFIIF.

Indexed as

DNA-Binding ProteinsGene DeletionGenetic Complementation TestMultiprotein ComplexesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional Elongation FactorsTranscription Factors, TFIITranscription Factor TFIIDDNA-Binding ProteinsDST1 protein, S cerevisiaeMultiprotein ComplexesSaccharomyces cerevisiae ProteinsTAF14 protein, S cerevisiaeTranscriptional Elongation Factorstranscription factor S-IITranscription Factors, TFIITranscription Factor TFIIDtranscription factor TFIIF

Identifiers

PMID16648643
PMCPMC1569716
OpenAlexW2100019242

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.