ArticleGenetics2006
Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana.
Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
19 citing papers in PubMed.
- The Arabidopsis PHD-finger protein EDM2 has multiple roles in balancing NLR immune receptor gene expression.PLoS genetics · 2020Article
- Ancestral Reconstruction of Karyotypes Reveals an Exceptional Rate of Nonrandom Chromosomal Evolution in Sunflower.Genetics · 2020Article
- Inferring defense-related gene families in Arabidopsis and wheat.BMC genomics · 2017Article
- Article
- VisualTE: a graphical interface for transposable element analysis at the genomic scale.BMC genomics · 2015Article
- Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.Genome biology · 2014Article
- Centromeres and kinetochores of Brassicaceae.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2014Review
- Exploiting a Reference Genome in Terms of Duplications: The Network of Paralogs and Single Copy Genes in Arabidopsis thaliana.Biology · 2013Article
- Article
- Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata.Genes & development · 2012Article
- A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations.BMC genomics · 2011Article
- Genome-wide binding site analysis of FAR-RED ELONGATED HYPOCOTYL3 reveals its novel function in Arabidopsis development.The Plant cell · 2011Article
- Genome-wide characterization of centromeric satellites from multiple mammalian genomes.Genome research · 2011Article
- The compact Brachypodium genome conserves centromeric regions of a common ancestor with wheat and rice.Functional & integrative genomics · 2010Article
- Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes.Nucleic acids research · 2009Article
- High DNA sequence diversity in pericentromeric genes of the plant Arabidopsis lyrata.Genetics · 2008Article
- Repetitive sequence-derived markers tag centromeres and telomeres and provide insights into chromosome evolution in Brassica napus.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2008Article
- Comparative genetic mapping in Boechera stricta, a close relative of Arabidopsis.Plant physiology · 2007Article
- Transcription-related mutations and GC content drive variation in nucleotide substitution rates across the genomes of Arabidopsis thaliana and Arabidopsis lyrata.BMC evolutionary biology · 2007Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We analyzed linkage and chromosomal positions of genes in A. lyrata ssp. petraea that are located near the centromere (CEN) regions of A. thaliana, using at least two genes from the short and long arms of each chromosome. In our map, genes from all 10 A. thaliana chromosome arms are also tightly linked in A. lyrata. Genes from the regions on the two sides of CEN5 have distant map localizations in A. lyrata (genes on the A. thaliana short-arm genes are on linkage group AL6, and long-arm genes are on AL7), but genes from the other four A. thaliana centromere regions remain closely linked in A. lyrata. The observation of complete linkage between short- and long-arm centromere genes, but not between genes in other genome regions that are separated by similar physical distances, suggests that crossing-over frequencies near the A. lyrata ssp. petraea centromere regions are low, as in A. thaliana. Thus, the centromere positions appear to be conserved between A. thaliana and A. lyrata, even though three centromeres have been lost in A. thaliana, and the core satellite sequences in the two species are very different. We can now definitively identify the three centromeres that were eliminated in the fusions that formed the A. thaliana chromosomes. However, we cannot tell whether genes were lost along with these centromeres, because such genes are absent from the A. thaliana genome, which is the sole source of markers for our mapping.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.