Evidence map›Paper›PMID 16648490›Full record

ArticleMolecular and cellular biology2006

Uncoupling the pleiotropic phenotypes of clk-1 with tRNA missense suppressors in Caenorhabditis elegans.

Robyn Branicky, Phuong Anh Thi Nguyen, Siegfried Hekimi

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Understanding coenzyme Q.Physiological reviews · 2024
    Review
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  4. A novelMolecular genetics and metabolism reports · 2022
    Article
  5. Article
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  10. The mitochondrial unfolded protein response activator ATFS-1 protects cells from inhibition of the mevalonate pathway.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Early mitochondrial dysfunction in long-lived Mclk1+/- mice.The Journal of biological chemistry · 2008
    Article
  17. Article
  18. Article
  19. The role of DMQ(9) in the long-lived mutant clk-1.Mechanisms of ageing and development
    Article
  20. Molecular genetics of ubiquinone biosynthesis in animals.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Robyn BranickyDepartment of Biology, McGill University, 1205 Ave. Docteur Penfield, Montreal, Quebec, Canada H3A 1B1.
Phuong Anh Thi Nguyen
Siegfried Hekimi
McGill University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

clk-1 encodes a demethoxyubiquinone (DMQ) hydroxylase that is necessary for ubiquinone biosynthesis. When Caenorhabditis elegans clk-1 mutants are grown on bacteria that synthesize ubiquinone (UQ), they are viable but have a pleiotropic phenotype that includes slowed development, behaviors, and aging. However, when grown on UQ-deficient bacteria, the mutants arrest development transiently before growing up to become sterile adults. We identified nine suppressors of the missense mutation clk-1(e2519), which harbors a Glu-to-Lys substitution. All suppress the mutant phenotypes on both UQ-replete and UQ-deficient bacteria. However, each mutant suppresses a different subset of phenotypes, indicating that most phenotypes can be uncoupled from each other. In addition, all suppressors restore the ability to synthesize exceedingly small amounts of UQ, although they still accumulate the precursor DMQ, suggesting that the presence of DMQ is not responsible for the Clk-1 phenotypes. We cloned six of the suppressors, and all encode tRNA(Glu) genes whose anticodons are altered to read the substituted Lys codon of clk-1(e2519). To our knowledge, these suppressors represent the first missense suppressors identified in any metazoan. The pattern of suppression we observe suggests that the individual members of the tRNA(Glu) family are expressed in different tissues and at different levels.

Indexed as

Genes, SuppressorMutation, MissensePhenotypeAmino Acid SubstitutionAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsChromatography, High Pressure LiquidCloning, MolecularGene Expression Regulation, DevelopmentalGenes, HelminthLysineRNA, Transfer, GluUbiquinoneCaenorhabditis elegans ProteinsCLK-1 protein, C elegansLysineRNA, Transfer, GluUbiquinone

Identifiers

PMID16648490
PMCPMC1488993
OpenAlexW2114477384

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.