Evidence map›Paper›PMID 16648466›Full record

ArticleMolecular and cellular biology2006

Tethering KSRP, a decay-promoting AU-rich element-binding protein, to mRNAs elicits mRNA decay.

Chu-Fang Chou, Alok Mulky, Sushmit Maitra, Wei-Jye Lin, Roberto Gherzi, John Kappes, Ching-Yi Chen

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 118 citations in OpenAlex.

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  15. The far-upstream element-binding protein 2 is correlated with proliferation and doxorubicin resistance in human breast cancer cell lines.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
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  17. Article
  18. Review
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  20. Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Chu-Fang ChouDepartment of Biochemistry & Molecular Genetics, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
Alok Mulky
Sushmit Maitra
Wei-Jye Lin
Roberto Gherzi
John Kappes
Ching-Yi Chen
University of Alabama at Birmingham · USBirmingham VA Medical Center · US

Funding

REGULATION OF EXOSOME-MEDIATED MAMMALIAN mRNA TURNOVERR01GM068758 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI CHEN, CHING-YI · 2004 to 2013
$2.5M
ANALYSIS OF INTEGRASE IN REVERSE TRANSCRIPTIONR01AI047714 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KAPPES, JOHN C · 2000 to 2003
$998k
NIAID NIH HHS AI47714NIAID NIH HHS R01 AI047714NIGMS NIH HHS GM68758NIGMS NIH HHS R01 GM068758
6 · The paper itself

Abstract

Inherently unstable mRNAs contain AU-rich elements (AREs) in their 3' untranslated regions that act as mRNA stability determinants by interacting with ARE-binding proteins (ARE-BPs). We have destabilized two mRNAs by fusing sequence-specific RNA-binding proteins to KSRP, a decay-promoting ARE-BP, in a tethering assay. These results support a model that KSRP recruits mRNA decay machinery/factors to elicit decay. The ability of tethered KSRP to elicit mRNA decay depends on functions of known mRNA decay enzymes. By targeting the Rev response element of human immunodeficiency virus type 1 by using Rev-KSRP fusion protein, we degraded viral mRNA, resulting in a dramatic reduction of viral replication. These results provide a foundation for the development of novel therapeutic strategies to inhibit specific gene expression in patients with acquired or hereditary diseases.

Indexed as

Regulatory Sequences, Nucleic Acid3' Untranslated RegionsAmino Acid MotifsBinding SitesBlotting, NorthernGenes, ReporterGlobinsHalf-LifeHeLa CellsHumansPrecipitin TestsProtein BindingProtein Structure, TertiaryRNA-Binding ProteinsRNA, MessengerRNA, Small Interfering3' Untranslated RegionsGlobinsKHSRP protein, humanRNA-Binding ProteinsRNA, MessengerRNA, Small InterferingTrans-Activators

Identifiers

PMID16648466
PMCPMC1489004
OpenAlexW2105994836

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.