Evidence map›Paper›PMID 16648251›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Voltage sensor conformations in the open and closed states in ROSETTA structural models of K(+) channels.

Vladimir Yarov-Yarovoy, David Baker, William A Catterall

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed.

  1. Atomistic mechanisms of the regulation of small-conductance CaProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Review
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  4. Article
  5. Review
  6. Article
  7. Article
  8. Autism-associated mutations in KProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Chemical modulation of Kv7 potassium channels.RSC medicinal chemistry · 2021
    Review
  10. High-Resolution Structures of KHandbook of experimental pharmacology · 2021
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
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  18. Article
  19. Phosphatidylinositol 4,5-bisphosphate (PIPThe Journal of biological chemistry · 2018
    Article
  20. Structural basis for activation of voltage sensor domains in an ion channel TPC1.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article

81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Vladimir Yarov-YarovoyDepartment of Pharmacology, University of Washington, Seattle, WA 98195, USA.
David Baker
William A Catterall

Funding

VOLTAGE-SENSITIVE SODIUM CHANNELS IN BRAINR01NS015751 · NINDS · UNIVERSITY OF WASHINGTON · PI CATTERALL, WILLIAM A · 1985 to 2018
$6.0M
Structural Modeling of Brain Sodium and Calcium ChannelsK01MH067625 · NIMH · UNIVERSITY OF WASHINGTON · PI YAROV-YAROVOY, VLADIMIR M. · 2003 to 2007
$552k
NIMH NIH HHS K01 MH067625NIMH NIH HHS K01 MH67625NINDS NIH HHS R01 NS015751NINDS NIH HHS R01 NS15751
6 · The paper itself

Abstract

Voltage-gated ion channels control generation and propagation of action potentials in excitable cells. Significant progress has been made in understanding structure and function of the voltage-gated ion channels, highlighted by the high-resolution open-state structure of the voltage-gated potassium channel, K(v)1.2. However, because the structure of the closed state is unknown, the gating mechanism remains controversial. We adapted the rosetta membrane method to model the structures of the K(v)1.2 and KvAP channels using homology, de novo, and domain assembly methods and selected the most plausible models using a limited number of experimental constraints. Our model of K(v)1.2 in the open state is very similar in overall topology to the x-ray structure of this channel. Modeling of KvAP in the open state suggests that orientation of the voltage-sensing domain relative to the pore-forming domain is considerably different from the orientation in the K(v)1.2 open state and that the magnitude of the vertical movement of S4 is significantly greater. Structural modeling of closed state of K(v)1.2 suggests gating movement that can be viewed as a sum of two previously suggested mechanisms: translation (2-4 A) plus rotation ( approximately 180 degrees ) of the S4 segment as proposed in the original "sliding helix" or "helical screw" models coupled with a rolling motion of the S1-S3 segments around S4, similar to recent "transporter" models of gating. We propose a unified mechanism of voltage-dependent gating for K(v)1.2 and KvAP in which this major conformational change moves the gating charge across the electric field in an analogous way for both channels.

Indexed as

Cell MembraneIon Channel GatingKv1.2 Potassium ChannelModels, MolecularProtein Structure, QuaternaryProtein Structure, TertiaryStructural Homology, ProteinKv1.2 Potassium Channel

Identifiers

PMID16648251
PMCPMC1464335

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.