Evidence map›Paper›PMID 16641935›Full record

ArticleEMBO reports2006

Structural and functional analysis of the putative pH sensor in the Kir1.1 (ROMK) potassium channel.

Markus Rapedius, Shozeb Haider, Katharine F Browne, Lijun Shang, Mark S P Sansom, Thomas Baukrowitz, Stephen J Tucker

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  4. Physiological relevance of proton-activated GPCRs.Pflugers Archiv : European journal of physiology · 2022
    Review
  5. Inwardly Rectifying KNeurochemical research · 2017
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Ion channels in renal disease.Chemical reviews · 2012
    Review
  16. Article
  17. Article
  18. Molecular mechanisms of acid-base sensing by the kidney.Journal of the American Society of Nephrology : JASN · 2012
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Markus RapediusInstitute of Physiology II, Friedrich Schiller University, Jena, Germany.
Shozeb Haider
Katharine F Browne
Lijun Shang
Mark S P Sansom
Thomas Baukrowitz
Stephen J Tucker
Oxford Gene Technology (United Kingdom) · GBFriedrich Schiller University Jena · DEUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council B19456Biotechnology and Biological Sciences Research Council BBS/B/16011Biotechnology and Biological Sciences Research Council BEP17032Wellcome Trust
6 · The paper itself

Abstract

The pH-sensitive renal potassium channel Kir1.1 is important for K+ homeostasis. Disruption of the pH-sensing mechanism causes type II Bartter syndrome. The pH sensor is thought to be an anomalously titrated lysine residue (K80) that interacts with two arginine residues as part of an 'RKR triad'. We show that a Kir1.1 orthologue from Fugu rubripes lacks this lysine and yet is still highly pH sensitive, indicating that K80 is not the H+ sensor. Instead, K80 functionally interacts with A177 on transmembrane domain 2 at the 'helix-bundle crossing' and controls the ability of pH-dependent conformational changes to induce pore closure. Although not required for pH inhibition, K80 is indispensable for the coupling of pH gating to the extracellular K+ concentration, explaining its conservation in most Kir1.1 orthologues. Furthermore, we demonstrate that instead of interacting with K80, the RKR arginine residues form highly conserved inter- and intra-subunit interactions that are important for Kir channel gating and influence pH sensitivity indirectly.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsArginineComputer SimulationConserved SequenceDose-Response Relationship, DrugElectrophysiologyFemaleHydrogen-Ion ConcentrationMicroinjectionsModels, MolecularMolecular Sequence DataOocytesPatch-Clamp TechniquesPhosphatidylinositol 4,5-DiphosphateArgininePhosphatidylinositol 4,5-DiphosphatePotassiumPotassium Channels, Inwardly RectifyingProtein SubunitsRNA, Messenger

Identifiers

PMID16641935
PMCPMC1479598
OpenAlexW2138075253

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.