Evidence map›Paper›PMID 16640773›Full record

ArticleBMC microbiology2006

Molecular characterization of Coxiella burnetii isolates by infrequent restriction site-PCR and MLVA typing.

Nathalie Arricau-Bouvery, Yolande Hauck, Awatef Bejaoui, Dimitrios Frangoulidis, Christelle C Bodier, Armel Souriau, Hermann Meyer, Heinrich Neubauer, Annie Rodolakis, Gilles Vergnaud

Abstract read
In one paragraph

Article in BMC microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

  1. Review
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  13. A Novel Marine MammalPathogens (Basel, Switzerland) · 2023
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  14. Detection ofVeterinarni medicina · 2023
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  15. Genotyping ofGenes · 2022
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  16. Article
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  19. Article
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nathalie Arricau-BouveryINRA, Pathologie Infectieuse et Immunologie, 37380 Nouzilly, France. bouvery@tours.inra.fr
Yolande Hauck
Awatef Bejaoui
Dimitrios Frangoulidis
Christelle C Bodier
Armel Souriau
Hermann Meyer
Heinrich Neubauer
Annie Rodolakis
Gilles Vergnaud

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCoxiella burnetii, the causative agent of Q fever, has a wide host range. Few epidemiological tools are available, and they are often expensive or not easily standardized across laboratories. In this work, C. burnetii isolates from livestock and ticks were typed using infrequent restriction site-PCR (IRS-PCR) and multiple loci variable number of tandem repeats (VNTR) analysis (MLVA).

resultsBy applying IRS-PCR, 14 C. burnetii isolates could be divided into six groups containing up to five different isolates. Clustering as deduced from MLVA typing with 17 markers provided an increased resolution with an excellent agreement to IRS-PCR, and with the plasmid type of each strain. MLVA was then applied to 28 additional C. burnetii isolates of different origin and 36 different genotypes were identified among the 42 isolates investigated. The clustering obtained is in agreement with published Multiple Locus Sequence Typing (MLST) data. Two panels of markers are proposed, panel 1 which can be confidently typed on agarose gel at a lower cost and in any laboratory setting (10 minisatellite markers with a repeat unit larger than 9 bp), and panel 2 which comprises 7 microsatellites and provides a higher discriminatory power.

conclusionOur analyses demonstrate that MLVA is a powerful and promising molecular typing tool with a high resolution and of low costs. The consistency of the results with independent methods suggests that MLVA can be applied for epidemiological studies. The resulting data can be queried on a dedicated MLVA genotyping Web service.

Indexed as

AnimalsCattleChick EmbryoCluster AnalysisCoxiella burnetiiDNA PrimersGenetic MarkersGenotypeHumansMiceMicrosatellite RepeatsMinisatellite RepeatsPhylogenyPlasmidsPolymerase Chain ReactionQ FeverDNA PrimersGenetic Markers

Identifiers

PMID16640773
PMCPMC1488860

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.