Evidence map›Paper›PMID 16639941›Full record

ArticleCanadian journal of veterinary research = Revue canadienne de recherche veterinaire2006

Molecular characterization of Streptococcus suis strains by 16S-23S intergenic spacer polymerase chain reaction and restriction fragment length polymorphism analysis.

Corinne Marois, Laëtitia Le Devendec, Marcelo Gottschalk, Marylène Kobisch

Abstract readComparative Study
In one paragraph

Article in Canadian journal of veterinary research = Revue canadienne de recherche veterinaire, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Tools for Molecular Epidemiology ofPathogens (Basel, Switzerland) · 2020
    Review
  3. Article
  4. Review
  5. Detection and molecular typing of Streptococcus suis in tonsils from live pigs in France.Canadian journal of veterinary research = Revue canadienne de recherche veterinaire · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Corinne MaroisAgence Française de Sécurité Sanitaire des Aliments, Unité de Mycoplasmologie-Bactériologie, BP53, 22440 Ploufragan, France. c.marois@ploufragan.afssa.fr
Laëtitia Le Devendec
Marcelo Gottschalk
Marylène Kobisch

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We developed a new molecular method of typing Streptococcus suis based on polymerase chain reaction (PCR) amplification of a large fragment of rRNA genes, including a part of the 16S and 23S genes and the 16S-23S intergenic spacer region (ISR), followed by restriction fragment length polymorphism (RFLP) analysis with RsaI or MboII endonuclease. The 16S-23S ISRs of 5 S. suis isolates were sequenced and compared. Size and sequence polymorphisms were observed between the S735 reference strain and the 4 wild-type strains. The genetic relationships between 138 independent S. suis strains belonging to various serotypes, isolated from swine or human cases, were determined. The discriminatory power of the method was > 0.95, the threshold value for interpreting typing results with confidence (0.954 with RsaI and 0.984 with RsaI plus MboII). The in vitro reproducibility was 100%. The strains isolated from humans were less genetically diverse than the strains isolated from pigs. For the first time, 2 molecular patterns (R6, M9) were significantly associated with S. suis serotype 2 strains. This genetic tool could be valuable in distinguishing individual isolates of S. suis during epidemiologic investigations.

Indexed as

Genes, rRNAPolymorphism, Restriction Fragment LengthAnimalsBase SequenceCluster AnalysisDNA, BacterialMolecular Sequence DataNucleic Acid HybridizationPhylogenyPolymerase Chain ReactionRNA, Ribosomal, 16SRNA, Ribosomal, 23SSequence AlignmentSpecies SpecificityStreptococcus suisDNA, BacterialRNA, Ribosomal, 16SRNA, Ribosomal, 23S

Identifiers

PMID16639941
PMCPMC1410728

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.