Evidence map›Paper›PMID 16632607›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Chromatin loop domain organization within the 4q35 locus in facioscapulohumeral dystrophy patients versus normal human myoblasts.

Andrei Petrov, Iryna Pirozhkova, Gilles Carnac, Dalila Laoudj, Marc Lipinski, Yegor S Vassetzky

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
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  8. PARP1 Differentially Interacts with Promoter region ofJournal of genetic syndromes & gene therapy · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Andrei PetrovInteractions Moléculaires et Cancer, Unité Mixte de Recherche 8126, Centre National de la Recherche Scientifique-Université Paris-Sud 11-Institut Gustave-Roussy, F-94805 Villejuif, France.
Iryna Pirozhkova
Gilles Carnac
Dalila Laoudj
Marc Lipinski
Yegor S Vassetzky
Institut Gustave Roussy · FRCentre de Recherche en Biologie cellulaire de Montpellier · FRUniversité Paris-Sud · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fascioscapulohumeral muscular dystrophy (FSHD) is an autosomal dominant neuromuscular disorder linked to partial deletion of integral numbers of a 3.3 kb polymorphic repeat, D4Z4, within the subtelomeric region of chromosome 4q. Although the relationship between deletions of D4Z4 and FSHD is well established, how this triggers the disease remains unclear. We have mapped the DNA loop domain containing the D4Z4 repeat cluster in human primary myoblasts and in murine-human hybrids. A nuclear matrix attachment site was found located in the vicinity of the repeat. Prominent in normal human myoblasts and nonmuscular human cells, this site is much weaker in muscle cells derived from FSHD patients, suggesting that the D4Z4 repeat array and upstream genes reside in two loops in nonmuscular cells and normal human myoblasts but in only one loop in FSHD myoblasts. We propose a model whereby the nuclear scaffold/matrix attached region regulates chromatin accessibility and expression of genes implicated in the genesis of FSHD.

Indexed as

Chromosomes, Human, Pair 4Nucleic Acid ConformationAnimalsChromatinChromosome MappingHeLa CellsHumansIn Situ Hybridization, FluorescenceMiceMuscular Dystrophy, FacioscapulohumeralMyoblastsNuclear MatrixOligonucleotide Array Sequence AnalysisRecombination, GeneticChromatin

Identifiers

PMID16632607
PMCPMC1459005
OpenAlexW2135469144

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.