Evidence map›Paper›PMID 16622520›Full record

ArticleMolecular medicine (Cambridge, Mass.)

Analysis of expressed and non-expressed IGK locus rearrangements in chronic lymphocytic leukemia.

Chrysoula Belessi, Kostas Stamatopoulos, Anastasia Hadzidimitriou, Katerina Hatzi, Tatjana Smilevska, Niki Stavroyianni, Fotini Marantidou, George Paterakis, Athanasios Fassas, Achilles Anagnostopoulos and 1 more

Open access · goldAbstract read
In one paragraph

Article in Molecular medicine (Cambridge, Mass.). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Chrysoula BelessiHematology Department, Nikea General Hospital, Piraeus, Greece. cbelessi@otenet.gr
Kostas Stamatopoulos
Anastasia Hadzidimitriou
Katerina Hatzi
Tatjana Smilevska
Niki Stavroyianni
Fotini Marantidou
George Paterakis
Athanasios Fassas
Achilles Anagnostopoulos
Nikolaos Laoutaris
G. Papanikolaou General Hospital · GRGeneral Hospital of Nikea · GRGeneral Hospital of Athens G. Genimatas · GR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Immunoglobulin kappa (IGK) locus rearrangements were analyzed in parallel on cDNA/genomic DNA in 188 kappa- and 103 lambda-chronic lymphocytic leukemia (CLL) cases. IGKV-KDE and IGKJ-C-intron-KDE rearrangements were also analyzed on genomic DNA. In kappa-CLL, only 3 of 188 cases carried double in-frame IGKV-J transcripts: in such cases, the possibility that leukemic cells expressed more than one kappa chain cannot be excluded. Twenty-eight kappa-CLL cases also carried nonexpressed (nontranscribed and/or out-of-frame) IGKV-J rearrangements. Taking IGKV-J, IGKV-KDE, and IGKJ-C-intron-KDE rearrangements together, 38% of kappa-CLL cases carried biallelic IGK locus rearrangements. In lambda-CLL, 69 IGKV-J rearrangements were detected in 64 of 103 cases (62%); 24 rearrangements (38.2%) were in-frame. Four cases carried in-frame IGKV-J transcripts but retained monotypic light-chain expression, suggesting posttranscriptional regulation of allelic exclusion. In all, taking IGKV-J, IGKV-KDE, and IGKJ-C-intron-KDE rearrangements together, 97% of lambda-CLL cases had at least 1 rearranged IGK allele, in keeping with normal cells. IG repertoire comparisons in kappa- versus lambda-CLL revealed that CLL precursor cells tried many rearrangements on the same IGK allele before they became lambda producers. Thirteen of 28 and 26 of 69 non-expressed sequences in, respectively, kappa- or lambda-CLL had < 100% homology to germline. This finding might be considered as evidence for secondary rearrangements occurring after the onset of somatic hypermutation, at least in some cases. The inactivation of potentially functional IGKV-J joints by secondary rearrangements indicates active receptor editing in CLL and provides further evidence for the role of antigen in CLL immunopathogenesis.

Indexed as

AdultAgedAmino Acid SequenceCells, CulturedFemaleGene Expression Regulation, NeoplasticGene Rearrangement, B-LymphocyteHumansImmunoglobulin Joining RegionImmunoglobulin kappa-ChainsImmunoglobulin lambda-ChainsImmunoglobulin Variable RegionLeukemia, Lymphocytic, Chronic, B-CellMaleMiddle AgedMolecular Sequence DataImmunoglobulin Joining RegionImmunoglobulin kappa-ChainsImmunoglobulin lambda-ChainsImmunoglobulin Variable RegionReceptors, Antigen, B-Cell

Identifiers

PMID16622520
PMCPMC1449522
OpenAlexW46001593

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.