Evidence map›Paper›PMID 16621813›Full record

ArticleJournal of bacteriology2006

In vitro and in vivo analysis of the role of PrrA in Rhodobacter sphaeroides 2.4.1 hemA gene expression.

Britton Ranson-Olson, Denise F Jones, Timothy J Donohue, Jill H Zeilstra-Ryalls

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

  1. Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
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  11. Development of the bacterial photosynthetic apparatus.Current opinion in microbiology · 2006
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Britton Ranson-OlsonDepartment of Biological Sciences, 374 Dodge Hall, Oakland University, Rochester, Michigan 48309, USA.
Denise F Jones
Timothy J Donohue
Jill H Zeilstra-Ryalls
Oakland University · USUniversity of Wisconsin–Madison · US

Funding

PROCESS AND REGULATION OF CYTOCHROME C SYNTHESISR01GM037509 · NIGMS · UNIVERSITY OF WISCONSIN MADISON · PI DONOHUE, TIMOTHY J · 1988 to 2002
$852k
NIGMS NIH HHS GM37509NIGMS NIH HHS R01 GM037509
6 · The paper itself

Abstract

The hemA gene codes for one of two synthases in Rhodobacter sphaeroides 2.4.1 which catalyze the formation of 5-aminolevulinic acid. We have examined the role of PrrA, a DNA binding protein that is associated with the metabolic switch between aerobic growth and anoxygenic photosynthetic growth, in hemA expression and found that hemA transcription is directly activated by PrrA. Using electrophoretic mobility shift assays and DNase I protection assays, we have mapped two binding sites for PrrA within the hemA upstream sequences, each of which contains an identical 9-bp motif. Using lacZ transcription reporter plasmids in wild-type strain 2.4.1 and PrrA- mutant strain PRRA2, we showed that PrrA was required for maximal expression. We also found that the relative impacts of altering DNA sequences within the two binding sites are different depending on whether cells are growing aerobically or anaerobically. This reveals a greater level of complexity associated with PrrA-mediated regulation of transcription than has been heretofore described. Our findings are of particular importance with respect to those genes regulated by PrrA having more than one upstream binding site. In the case of the hemA gene, we discuss possibilities as to how these new insights can be accommodated within the context of what has already been established for hemA transcription regulation in R. sphaeroides.

Indexed as

AerobiosisAldehyde OxidoreductasesAminolevulinic AcidBacterial ProteinsBase SequenceBinding SitesDNA-Binding ProteinsGene Expression Regulation, BacterialMolecular Sequence DataMutationRhodobacter sphaeroidesAldehyde OxidoreductasesAminolevulinic AcidBacterial ProteinsDNA-Binding Proteins

Identifiers

PMID16621813
PMCPMC1447469
OpenAlexW1991569612

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.