Evidence map›Paper›PMID 16619030›Full record

ArticleThe EMBO journal2006

The 20S proteasome processes NF-kappaB1 p105 into p50 in a translation-independent manner.

Anu K Moorthy, Olga V Savinova, Jessica Q Ho, Vivien Ya-Fan Wang, Don Vu, Gourisankar Ghosh

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 141 citations in OpenAlex.

  1. Article
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  15. DetrimentalFrontiers in immunology · 2022
    Article
  16. Article
  17. Cancer discovery · 2021
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  19. Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Anu K MoorthyDepartment of Chemistry and Biochemistry, University of California-San Diego, La Jolla, 92093, USA.
Olga V Savinova
Jessica Q Ho
Vivien Ya-Fan Wang
Don Vu
Gourisankar Ghosh
University of California, San Diego · US

Funding

STRUCTURE AND STABILITY OF IKB/NF-KB COMPLEXESP01GM071862 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOMIVES, ELIZABETH A. · 2006 to 2016
$14.9M
Processing of NF-kB2/P100R01AI064326 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, GOURISANKAR · 2005 to 2015
$3.2M
NCI NIH HHS CA71718NIAID NIH HHS AI064326NIAID NIH HHS R01 AI064326NIGMS NIH HHS GM071862NIGMS NIH HHS P01 GM071862
6 · The paper itself

Abstract

The NF-kappaB p50 is the N-terminal processed product of the precursor, p105. It has been suggested that p50 is generated not from full-length p105 but cotranslationally from incompletely synthesized molecules by the proteasome. We show that the 20S proteasome endoproteolytically cleaves the fully synthesized p105 and selectively degrades the C-terminus of p105, leading to p50 generation in a ubiquitin-independent manner. As small as 25 residues C-terminus to the site of processing are sufficient to promote processing in vivo. However, any p105 mutant that lacks complete ankyrin repeat domain (ARD) is processed aberrantly, suggesting that native processing must occur from a precursor, which extends beyond the ARD. Remarkably, the mutant p105 that lacks the internal region including the glycine-rich region (GRR) is completely degraded by 20S proteasome in vitro. This suggests that the GRR impedes the complete degradation of the p105 precursor, thus contributing to p50 generation.

Indexed as

Protein Processing, Post-TranslationalAnimalsAnkyrin RepeatGlycineMiceMutationNF-kappa B p50 SubunitProteasome Endopeptidase ComplexProtein BiosynthesisProtein Structure, TertiaryUbiquitinGlycineNF-kappa B p50 SubunitNfkb1 protein, mouseProteasome Endopeptidase ComplexUbiquitin

Identifiers

PMID16619030
PMCPMC1456938
OpenAlexW1990554338

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.