Evidence map›Paper›PMID 16618800›Full record

ArticleGenes & development2006

A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities.

Tetyana Klymenko, Bernadett Papp, Wolfgang Fischle, Thomas Köcher, Malgorzata Schelder, Cornelia Fritsch, Brigitte Wild, Matthias Wilm, Jürg Müller

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 202 papers.

0numbers the graph read from it
0cells of the map it votes in
202citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

202 citing papers in PubMed, 404 citations in OpenAlex.

  1. Review
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  5. Foxh1 is a locus-specific PRC2 recruiter governing germ layer silencing.bioRxiv : the preprint server for biology · 2025
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  8. Genes & development · 2024
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  9. A nuclear architecture screen inGenes & development · 2024
    Article
  10. Article
  11. Article
  12. Review
  13. A nuclear architecture screen inbioRxiv : the preprint server for biology · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Polycomb Recruiters Inside and Outside of the Repressed Domains.International journal of molecular sciences · 2023
    Review
  18. Article
  19. Genetic and Epigenetic Regulation ofJournal of developmental biology · 2023
    Review
  20. Nuclear architecture and the structural basis of mitotic memory.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023
    Review

142 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Tetyana KlymenkoGene Expression Programme, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.
Bernadett Papp
Wolfgang Fischle
Thomas Köcher
Malgorzata Schelder
Cornelia Fritsch
Brigitte Wild
Matthias Wilm
Jürg Müller
European Molecular Biology Laboratory · DERockefeller University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polycomb response elements (PREs) are specific cis-regulatory sequences needed for transcriptional repression of HOX and other target genes by Polycomb group (PcG) proteins. Among the many PcG proteins known in Drosophila, Pho is the only sequence-specific DNA-binding protein. To gain insight into the function of Pho, we purified Pho protein complexes from Drosophila embryos and found that Pho exists in two distinct protein assemblies: a Pho-dINO80 complex containing the Drosophila INO80 nucleosome-remodeling complex, and a Pho-repressive complex (PhoRC) containing the uncharacterized gene product dSfmbt. Analysis of PhoRC reveals that dSfmbt is a novel PcG protein that is essential for HOX gene repression in Drosophila. PhoRC is bound at HOX gene PREs in vivo, and this targeting strictly depends on Pho-binding sites. Characterization of dSfmbt protein shows that its MBT repeats have unique discriminatory binding activity for methylated lysine residues in histones H3 and H4; the MBT repeats bind mono- and di-methylated H3-K9 and H4-K20 but fail to interact with these residues if they are unmodified or tri-methylated. Our results establish PhoRC as a novel Drosophila PcG protein complex that combines DNA-targeting activity (Pho) with a unique modified histone-binding activity (dSfmbt). We propose that PRE-tethered PhoRC selectively interacts with methylated histones in the chromatin flanking PREs to maintain a Polycomb-repressed chromatin state.

Indexed as

Amino Acid SequenceAnimalsAnimals, Genetically ModifiedChromatinDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEmbryo, NonmammalianGene SilencingHistonesHomeodomain ProteinsLysineMethylationMolecular Sequence DataPolycomb-Group ProteinsProtein BindingChromatinDNA-Binding ProteinsDrosophila ProteinsHistonesHomeodomain ProteinsLysinepho protein, DrosophilaPolycomb-Group ProteinsTranscription Factors

Identifiers

PMID16618800
PMCPMC1472471
OpenAlexW2133400477

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.