Evidence map›Paper›PMID 16618389›Full record

ArticleGastroenterology2006

Hepatocyte nuclear factor 4alpha is essential for embryonic development of the mouse colon.

Wendy D Garrison, Michele A Battle, Chuhu Yang, Klaus H Kaestner, Frances M Sladek, Stephen A Duncan

Open access · bronzeAbstract read
In one paragraph

Article in Gastroenterology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 170 citations in OpenAlex.

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  8. The lncRNA HOTAIR: a pleiotropic regulator of epithelial cell plasticity.Journal of experimental & clinical cancer research : CR · 2023
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  10. Be like water, my cells: cell plasticity and the art of transformation.Frontiers in cell and developmental biology · 2023
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  17. Review
  18. Article
  19. Article
  20. Review

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Wendy D GarrisonDepartment of Cell Biology, Neurobiology and Anatomy, Medical College of Wisconsin, Milwaukee, Wisconsin 53326, USA.
Michele A Battle
Chuhu Yang
Klaus H Kaestner
Frances M Sladek
Stephen A Duncan
Medical College of Wisconsin · USUniversity of California, Riverside · USUniversity of Pennsylvania · US

Funding

REGULATION OF LIVER SPECIFIC GENE EXPRESSIONR01DK053892 · NIDDK · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI SLADEK, FRANCES M. · 1998 to 2015
$5.3M
The role of HNF4 in gastrointestinal developmentF32DK067808 · NIDDK · MEDICAL COLLEGE OF WISCONSIN · PI BATTLE, MICHELE A · 2004 to 2006
$137k
NIDDK NIH HHS F32 DK067808NIDDK NIH HHS R01 DK053892
6 · The paper itself

Abstract

BACKGROUND &

aimsHepatocyte nuclear factor 4 alpha (HNF4alpha) is a transcription factor that has been shown to be required for hepatocyte differentiation and development of the liver. It has also been implicated in regulating expression of genes that act in the epithelium of the lower gastrointestinal tract. This implied that HNF4alpha might be required for development of the gut.

methodsMouse embryos were generated in which Hnf4a was ablated in the epithelial cells of the fetal colon by using Cre-loxP technology. Embryos were examined by using a combination of histology, immunohistochemistry, DNA microarray, reverse-transcription polymerase chain reaction, electrophoretic mobility shift assays, and chromatin immunoprecipitation analyses to define the consequences of loss of HNF4alpha on colon development.

resultsEmbryos were recovered at E18.5 that lacked HNF4alpha in their colons. Although early stages of colonic development occurred, HNF4alpha-null colons failed to form normal crypts. In addition, goblet-cell maturation was perturbed and expression of an array of genes that encode proteins with diverse roles in colon function was disrupted. Several genes whose expression in the colon was dependent on HNF4alpha contained HNF4alpha-binding sites within putative transcriptional regulatory regions and a subset of these sites were occupied by HNF4alpha in vivo.

conclusionsHNF4alpha is a transcription factor that is essential for development of the mammalian colon, regulates goblet-cell maturation, and is required for expression of genes that control normal colon function and epithelial cell differentiation.

Indexed as

AnimalsCell CountColonEmbryo, MammalianEmbryonic DevelopmentGastric MucosaGene ExpressionGoblet CellsHepatocyte Nuclear Factor 4ImmunohistochemistryIntestinal MucosaMiceMice, KnockoutOligonucleotide Array Sequence AnalysisReference ValuesReverse Transcriptase Polymerase Chain ReactionHepatocyte Nuclear Factor 4

Identifiers

PMID16618389
PMCPMC3581272
OpenAlexW2067922543

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.