Evidence map›Paper›PMID 16617147›Full record

ArticleNucleic acids research2006

Identification and characterization of mitochondrial abasic (AP)-endonuclease in mammalian cells.

Ranajoy Chattopadhyay, Lee Wiederhold, Bartosz Szczesny, Istvan Boldogh, Tapas K Hazra, Tadahide Izumi, Sankar Mitra

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 153 citations in OpenAlex.

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  20. Mitochondrial transcription factor A promotes DNA strand cleavage at abasic sites.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ranajoy ChattopadhyaySealy Center for Molecular Science, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555-1079, USA.
Lee Wiederhold
Bartosz Szczesny
Istvan Boldogh
Tapas K Hazra
Tadahide Izumi
Sankar Mitra
The University of Texas Medical Branch at Galveston · US

Funding

Synthetic Organic Chemistry CoreP30ES006676 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ELFERINK, CORNELIS JOHAN · 1995 to 2017
$21.7M
OXIDATIVE STRESS,REPAIR OF OXIDIZED GUANINES IN AGED CELLSP01AG021830 · NIA · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PAPACONSTANTINOU, JOHN NMN · 2004 to 2010
$6.4M
STRUCTURE AND REGULATION OF DNA REPAIR GENES OF MAMMALSR01CA053791 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI MITRA, SANKAR · 1991 to 2011
$4.0M
Regulatory Functions of APE1 - An Essential Repair ProteinR01ES008457 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI MITRA, SANKAR · 1997 to 2010
$3.3M
Repair of oxidative DNA damage in mammalian cellsR01CA098664 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI IZUMI, TADAHIDE · 2003 to 2013
$2.4M
Repair of oxidative DNA damage in mammalian cellsR56CA098664 · NCI · LSU HEALTH SCIENCES CENTER · PI IZUMI, TADAHIDE · 2008 to 2008
$227k
NCI NIH HHS CA98664NCI NIH HHS R01 CA053791NCI NIH HHS R01 CA098664NCI NIH HHS R01 CA53791NCI NIH HHS R56 CA098664NIA NIH HHS P01 AG021830NIEHS NIH HHS ES06676NIEHS NIH HHS ES08457NIEHS NIH HHS P30 ES006676NIEHS NIH HHS R01 ES008457
6 · The paper itself

Abstract

Abasic (AP)-endonuclease (APE) is responsible for repair of AP sites, and single-strand DNA breaks with 3' blocking groups that are generated either spontaneously or during repair of damaged or abnormal bases via the DNA base excision repair (BER) pathway in both nucleus and mitochondria. Mammalian cells express only one nuclear APE, 36 kDa APE1, which is essential for survival. Mammalian mitochondrial (mt) BER enzymes other than mtAPE have been characterized. In order to identify and characterize mtAPE, we purified the APE activity from beef liver mitochondria to near homogeneity, and showed that the mtAPE which has 3-fold higher specific activity relative to APE1 is derived from the latter with deletion of 33 N-terminal residues which contain the nuclear localization signal. The mtAPE-sized product could be generated by incubating 35S-labeled APE1 with crude mitochondrial extract, but not with cytosolic or nuclear extract, suggesting that cleavage of APE1 by a specific mitochondria-associated N-terminal peptidase is a prerequisite for mitochondrial import. The low abundance of mtAPE, particularly in cultured cells might be the reason for its earlier lack of detection by western analysis.

Indexed as

Amino Acid SequenceAnimalsCattleDNA-(Apurinic or Apyrimidinic Site) LyaseEnzyme StabilityHumansKineticsMiceMitochondriaMitochondria, LiverMitochondrial ProteinsMolecular Sequence DataPeptide HydrolasesRecombinant ProteinsSequence DeletionAPEX1 protein, humanDNA-(Apurinic or Apyrimidinic Site) LyaseMitochondrial ProteinsPeptide HydrolasesRecombinant Proteins

Identifiers

PMID16617147
PMCPMC1440881
OpenAlexW2136995982

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.