Evidence map›Paper›PMID 16614778›Full record

ArticleMolecular genetics and genomics : MGG2006

Gene expression and genetic mapping analyses of a perennial ryegrass glycine-rich RNA-binding protein gene suggest a role in cold adaptation.

H Shinozuka, H Hisano, S Yoneyama, Y Shimamoto, E S Jones, J W Forster, T Yamada, A Kanazawa

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. International journal of molecular sciences · 2024
    Article
  3. Review
  4. Genome-wide identification, phylogenetic analysis, and expression profiling of glycine-rich RNA-binding protein (GRPs) genes in seeded and seedless grapes (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Genetic mapping of DArT markers in the Festuca-Lolium complex and their use in freezing tolerance association analysis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

H ShinozukaGraduate School of Agriculture, Hokkaido University, 060-8589 Sapporo, Japan.
H Hisano
S Yoneyama
Y Shimamoto
E S Jones
J W Forster
T Yamada
A Kanazawa
Hokkaido University · JPAgriBio · AUPioneer Hi-Bred · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A perennial ryegrass cDNA clone encoding a putative glycine-rich RNA binding protein (LpGRP1) was isolated from a cDNA library constructed from crown tissues of cold-treated plants. The deduced polypeptide sequence consists of 107 amino acids with a single N-terminal RNA recognition motif (RRM) and a single C-terminal glycine-rich domain. The sequence showed extensive homology to glycine-rich RNA binding proteins previously identified in other plant species. LpGRP1-specific genomic DNA sequence was isolated by an inverse PCR amplification. A single intron which shows conserved locations in plant genes was detected between the sequence motifs encoding RNP-1 and RNP-2 consensus protein domains. A significant increase in the mRNA level of LpGRP1 was detected in root, crown and leaf tissues during the treatment of plants at 4 degrees C, through which freezing tolerance is attained. The increase in the mRNA level was prominent at least 2 h after the commencement of the cold treatment, and persisted for at least 1 week. Changes in mRNA level induced by cold treatment were more obvious than those due to treatments with abscisic acid (ABA) and drought. The LpGRP1 protein was found to localise in the nucleus in onion epidermal cells, suggesting that it may be involved in pre-mRNA processing. The LpGRP1 gene locus was mapped to linkage group 2. Possible roles for the LpGRP1 protein in adaptation to cold environments are discussed.

Indexed as

Abscisic AcidAcclimatizationAmino Acid MotifsAmino Acid SequenceBase SequenceCell NucleusChromosome MappingCloning, MolecularCold TemperatureCytoplasmGene Expression Regulation, PlantGenetic LinkageLoliumMolecular Sequence DataPlant ProteinsRNA-Binding ProteinsAbscisic Acidglycine-rich RNA-binding protein, plantPlant ProteinsRNA-Binding Proteins

Identifiers

PMID16614778
OpenAlexW2054254515

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.