Evidence map›Paper›PMID 16611889›Full record

ArticleJournal of virology2006

Crystal structure of the simian virus 40 large T-antigen origin-binding domain.

Gretchen Meinke, Peter A Bullock, Andrew Bohm

Abstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. SV40 T-antigen uses a DNA shearing mechanism to initiate origin unwinding.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Origin DNA melting and unwinding in DNA replication.Current opinion in structural biology · 2010
    Review
  15. Article
  16. Article
  17. The Mcm complex: unwinding the mechanism of a replicative helicase.Microbiology and molecular biology reviews : MMBR · 2009
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Gretchen MeinkeTufts University School of Medicine, Department of Biochemistry, 136 Harrison Avenue, Boston, Massachusetts 02111, USA.
Peter A Bullock
Andrew Bohm

Funding

INITIATION OF SV40 DNA REPLICATION AND ITS REGULATIONR01GM055397 · NIGMS · TUFTS UNIVERSITY BOSTON · PI BULLOCK, PETER AUGUSTUS · 1997 to 2010
$3.5M
NIGMS NIH HHS R01 GM055397NIGMS NIH HHS R01 GM055397-12NIGMS NIH HHS R01 GM055397-12S1
6 · The paper itself

Abstract

The origins of replication of DNA tumor viruses have a highly conserved feature, namely, multiple binding sites for their respective initiator proteins arranged as inverted repeats. In the 1.45-angstroms crystal structure of the simian virus 40 large T-antigen (T-ag) origin-binding domain (obd) reported herein, T-ag obd monomers form a left-handed spiral with an inner channel of 30 angstroms having six monomers per turn. The inner surface of the spiral is positively charged and includes residues known to bind DNA. Residues implicated in hexamerization of full-length T-ag are located at the interface between adjacent T-ag obd monomers. These data provide a high-resolution model of the hexamer of origin-binding domains observed in electron microscopy studies and allow the obd's to be oriented relative to the hexamer of T-ag helicase domains to which they are connected.

Indexed as

Amino Acid SequenceAntigens, Viral, TumorBase SequenceBinding SitesCrystallography, X-RayDNA, ViralModels, MolecularMolecular Sequence DataProtein BindingProtein Structure, QuaternaryProtein Structure, TertiaryReplication OriginSimian virus 40Antigens, Viral, TumorDNA, Viral

Identifiers

PMID16611889
PMCPMC1472039

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.