Evidence map›Paper›PMID 16604453›Full record

ArticleVirus genes2006

Genomic analysis of recombinant sabin clinical isolates.

Eleni Paximadi, Ioannis Karakasiliotis, Zissis Mamuris, Constantinos Stathopoulos, Vassilis Krikelis, Panayotis Markoulatos

Abstract read
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In one paragraph

Article in Virus genes, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Correlation of mutations and recombination with growth kinetics of poliovirus vaccine strains.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Eleni PaximadiDepartment of Biochemistry and Biotechnology, School of Health Sciences, University of Thessaly, Ploutonos, Larissa, Greece.
Ioannis Karakasiliotis
Zissis Mamuris
Constantinos Stathopoulos
Vassilis Krikelis
Panayotis Markoulatos
University of Thessaly · GRPasteur Hellenic Institute · GRTechnological Educational Institute of Thessaly · GRUniversity of Reading · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recombination in Poliovirus vaccine strains is a very frequent phenomenon. In this report 23 polio/Sabin strains isolated from healthy vaccinees or from VAPP patients after OPV administration, were investigated in order to identify recombination sites from 2C to 3D regions of the poliovirus genome. RT-PCR, followed by Restriction Fragment Length Polymorphism (RFLP) screening analysis were applied in four distant genomic regions (5' UTR, VP1, 2C and 3C-3D) in order to detect any putative recombinant. The detected recombinants were sequenced from 2C to the end of the genome (3' UTR) and the exact recombination sites were determined with computational analysis. Five of the 23 isolated strains were recombinant in one genomic region, two of them in 2C, isolates EP16:S3/S2, EP23:S3/S1, two in 3D isolates EP6:S2/S1, EP12:S2/S1 and one in 3A isolate EP9:S2/Sl. Point mutations were found in strains EP3, EP6, EP9 and EP12. Recombination specific types and sites re-occurrence along with point mutations are discussed concerning the polioviruses evolution.

Indexed as

Genome, ViralPoliovirus Vaccine, OralRecombination, Genetic3C Viral Proteases5' Untranslated RegionsBase SequenceCapsid ProteinsCarrier ProteinsCysteine EndopeptidasesEvolution, MolecularHumansMolecular Sequence DataPoint MutationPoliovirusPolymorphism, Restriction Fragment LengthReverse Transcriptase Polymerase Chain Reaction2C protein, viral3C Viral Proteases5' Untranslated RegionsCapsid ProteinsCarrier ProteinsCysteine EndopeptidasesPoliovirus Vaccine, Oralpolymerase 3Dpol, poliovirusRNA-Dependent RNA PolymeraseRNA, ViralViral Nonstructural ProteinsViral ProteinsVP1 protein, Poliovirus

Identifiers

PMID16604453
OpenAlexW2081657912

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.