Evidence map›Paper›PMID 16604441›Full record

ArticleNeurochemical research2006

Isolation and characterization of SATB2, a novel AT-rich DNA binding protein expressed in development- and cell-specific manner in the rat brain.

Marianna Szemes, Andrea Gyorgy, Cloud Paweletz, Albert Dobi, Denes V Agoston

Open access · bronzeAbstract read
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In one paragraph

Article in Neurochemical research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
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  7. Genes · 2023
    Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. SATB2 is a novel biomarker and therapeutic target for cancer.Journal of cellular and molecular medicine · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Marianna SzemesDepartment of Anatomy, Physiology and Genetics, USUHS, Bethesda, MD 20814, USA.
Andrea Gyorgy
Cloud Paweletz
Albert Dobi
Denes V Agoston
Uniformed Services University of the Health Sciences · USMerck & Co., Inc., Rahway, NJ, USA (United States) · USProstate Cancer Research · GB

Funding

Intramural NIH HHS
6 · The paper itself

Abstract

AT-rich DNA elements play an important role in regulating cell-specific gene expression. One of the AT-rich DNA binding proteins, SATB1 is a novel type of transcription factor that regulates gene expression in the hematopoietic lineage through chromatin modification. Using DNA-affinity purification followed by mass spectrometry we identified and isolated a related protein, SATB2 from the developing rat cerebral cortex. SATB2 shows homology to SATB1 and the rat protein is practically identical to the mouse and human SATB2. Using competitive EMSA, we show that recombinant SATB2 protein binds with high affinity and specificity to AT-rich dsDNA. Using RT-PCR, Western analysis and immunohistochemistry we demonstrate that SATB2 expression is restricted to a subset of postmitotic, differentiating neurons in the rat neocortex at ages E16 and P4. We suggest that similar to its homologue SATB1, SATB2 is also involved in regulating gene expression through altering chromatin structure in differentiating cortical neurons.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBlotting, WesternBrainDNA-Binding ProteinsDNA PrimersElectrophoretic Mobility Shift AssayGene Expression Regulation, DevelopmentalHumansMolecular Sequence DataNerve Tissue ProteinsRatsReverse Transcriptase Polymerase Chain ReactionSequence Homology, Amino AcidDNA-Binding ProteinsDNA PrimersNerve Tissue ProteinsSAT2B protein, rat

Identifiers

PMID16604441
OpenAlexW1964886835

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.