ArticlePlant physiology2006
Transcriptome analysis of cold acclimation in barley albina and xantha mutants.
Article in Plant physiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.
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Who cites it
66 citing papers in PubMed.
- Genetic dissection of inherited cold-stress reveals resilience hotspots in barley.Molecular genetics and genomics : MGG · 2026Article
- Integrated 16 S rRNA and transcriptome analysis reveal molecular and microbial mechanisms of cold-tolerant germination in hulless barley.BMC genomics · 2025Article
- Transcriptome analysis of brassinolide under low temperature stress in winter wheat.AoB PLANTS · 2023Article
- Unraveling the genomic reorganization of polygalacturonase-inhibiting proteins in chickpea.Frontiers in genetics · 2023Article
- Transcriptome-based gene regulatory network analyses of differential cold tolerance of two tobacco cultivars.BMC plant biology · 2022Article
- Chloroplast translational regulation uncovers nonessential photosynthesis genes as key players in plant cold acclimation.The Plant cell · 2022Article
- Bioinspired Rhamnolipid Protects Wheat AgainstFrontiers in plant science · 2022Article
- Crosstalk between Light- and Temperature-Mediated Processes under Cold and Heat Stress Conditions in Plants.International journal of molecular sciences · 2021Review
- Comparative transcriptome analysis of Rheum australe, an endangered medicinal herb, growing in its natural habitat and those grown in controlled growth chambers.Scientific reports · 2021Article
- Crucial Cell Signaling Compounds Crosstalk and Integrative Multi-Omics Techniques for Salinity Stress Tolerance in Plants.Frontiers in plant science · 2021Review
- Characterization ofPlants (Basel, Switzerland) · 2020Article
- iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage.BMC genomics · 2020Article
- Cloning and characterization of two chlorophyll A/B binding protein genes and analysis of their gene family in Camellia sinensis.Scientific reports · 2020Article
- A Stress-Responsive NAC Transcription Factor from Tiger Lily (LlNAC2) Interacts with LlDREB1 and LlZHFD4 and Enhances Various Abiotic Stress Tolerance in Arabidopsis.International journal of molecular sciences · 2019Article
- An eukaryotic elongation factor 2 from Medicago falcata (MfEF2) confers cold tolerance.BMC plant biology · 2019Article
- Evolution of Cold Acclimation and Its Role in Niche Transition in the Temperate Grass Subfamily Pooideae.Plant physiology · 2019Article
- Genotype Specific Photosynthesis x Environment Interactions Captured by Automated Fluorescence Canopy Scans Over Two Fluctuating Growing Seasons.Frontiers in plant science · 2019Article
- Differentially Expressed Genes Associated with the Cabbage Yellow-Green-Leaf Mutant in theInternational journal of molecular sciences · 2018Article
- Comparative proteomic analysis of QTL CTS-12 derived from wild rice (Oryza rufipogon Griff.), in the regulation of cold acclimation and de-acclimation of rice (Oryza sativa L.) in response to severe chilling stress.BMC plant biology · 2018Article
- Early Cold-Induced Peroxidases and Aquaporins Are Associated With High Cold Tolerance in Dajiao (Frontiers in plant science · 2018Article
6 more citing papers are in PubMed but not listed here.
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Authors and funding
7 authors.
Funding
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Abstract
Previously, we have shown that barley (Hordeum vulgare) plants carrying a mutation preventing chloroplast development are completely frost susceptible as well as impaired in the expression of several cold-regulated genes. Here we investigated the transcriptome of barley albina and xantha mutants and the corresponding wild type to assess the effect of the chloroplast on expression of cold-regulated genes. First, by comparing control wild type against cold-hardened wild-type plants 2,735 probe sets with statistically significant changes (P = 0.05; > or = 2-fold change) were identified. Expression of these wild-type cold-regulated genes was then analyzed in control and cold-hardened mutants. Only about 11% of the genes cold regulated in wild type were regulated to a similar extent in all genotypes (chloroplast-independent cold-regulated genes); this class includes many genes known to be under C-repeat binding factor control. C-repeat binding factor genes were also equally induced in mutants and wild-type plants. About 67% of wild-type cold-regulated genes were not regulated by cold in any mutant (chloroplast-dependent cold-regulated genes). We found that the lack of cold regulation in the mutants is due to the presence of signaling pathway(s) normally cold activated in wild type but constitutively active in the mutants, as well as to the disruption of low-temperature signaling pathway(s) due to the absence of active chloroplasts. We also found that photooxidative stress signaling pathway is constitutively active in the mutants. These results demonstrate the major role of the chloroplast in the control of the molecular adaptation to cold.
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