Evidence map›Paper›PMID 16603493›Full record

ArticleBiophysical journal2006

Probabilistic modeling of rosette formation.

Mian Long, Juan Chen, Ning Jiang, Periasamy Selvaraj, Rodger P McEver, Cheng Zhu

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

Mian LongNational Microgravity Laboratory, Institute of Mechanics, Chinese Academy of Sciences, Beijing 100080, People's Republic of China. mlong@imech.ac.cn
Juan Chen
Ning Jiang
Periasamy Selvaraj
Rodger P McEver
Cheng Zhu
Georgia Institute of Technology · USChinese Academy of Sciences · CNEmory University · USInstitute of Mechanics · CNOklahoma Medical Research Foundation · US

Funding

Visualizing Single Integrin Conformational Changes on Living CellsR01AI044902 · NIAID · GEORGIA INSTITUTE OF TECHNOLOGY · PI ZHU, CHENG · 2000 to 2016
$5.8M
MOLECULAR BASIS OF SELECTIN INTERACTIONS WITH LEUKOCYTESR01HL065631 · NHLBI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI MCEVER, RODGER PAUL · 2000 to 2004
$3.0M
Ligand Binding Kinetics and Cell Adhesion by Fc ReceptorR01AI038282 · NIAID · GEORGIA INSTITUTE OF TECHNOLOGY · PI ZHU, CHENG · 2001 to 2005
$1.9M
Regulation of CD32A in neutrophilsR01AI049400 · NIAID · EMORY UNIVERSITY · PI SELVARAJ, PERIASAMY · 2003 to 2007
$1.5M
Kinetic analysis of ligand binding by TCR and CD8R56AI038282 · NIAID · GEORGIA INSTITUTE OF TECHNOLOGY · PI ZHU, CHENG · 2012 to 2012
$389k
Kinetic Analysis of the PSGL-1 MoleculeR03TW005774 · FIC · GEORGIA INSTITUTE OF TECHNOLOGY · PI ZHU, CHENG · 2002 to 2004
$143k
KINETIC PROPERTIES OF SELECTINSR21AI044902 · NIAID · GEORGIA INSTITUTE OF TECHNOLOGY · PI ZHU, CHENG · 2000 to 2000
$71k
LIGAND BONDING FORCE AND CELL ADHESION BY CD16 ISOFORMSR29AI038282 · NIAID · GEORGIA INSTITUTE OF TECHNOLOGY · PI ZHU, CHENG · 1995 to 1999
–
FIC NIH HHS R03 TW005774FIC NIH HHS TW 05774-01NHLBI NIH HHS HL 65631NHLBI NIH HHS R01 HL065631NIAID NIH HHS AI38282NIAID NIH HHS AI44902NIAID NIH HHS AI49400NIAID NIH HHS R01 AI038282NIAID NIH HHS R01 AI044902NIAID NIH HHS R01 AI049400NIAID NIH HHS R21 AI044902NIAID NIH HHS R29 AI038282NIAID NIH HHS R56 AI038282
6 · The paper itself

Abstract

Rosetting, or forming a cell aggregate between a single target nucleated cell and a number of red blood cells (RBCs), is a simple assay for cell adhesion mediated by specific receptor-ligand interaction. For example, rosette formation between sheep RBC and human lymphocytes has been used to differentiate T cells from B cells. Rosetting assay is commonly used to determine the interaction of Fc gamma-receptors (FcgammaR) expressed on inflammatory cells and IgG coated on RBCs. Despite its wide use in measuring cell adhesion, the biophysical parameters of rosette formation have not been well characterized. Here we developed a probabilistic model to describe the distribution of rosette sizes, which is Poissonian. The average rosette size is predicted to be proportional to the apparent two-dimensional binding affinity of the interacting receptor-ligand pair and their site densities. The model has been supported by experiments of rosettes mediated by four molecular interactions: FcgammaRIII interacting with IgG, T cell receptor and coreceptor CD8 interacting with antigen peptide presented by major histocompatibility molecule, P-selectin interacting with P-selectin glycoprotein ligand 1 (PSGL-1), and L-selectin interacting with PSGL-1. The latter two are structurally similar and are different from the former two. Fitting the model to data enabled us to evaluate the apparent effective two-dimensional binding affinity of the interacting molecular pairs: 7.19x10(-5) microm4 for FcgammaRIII-IgG interaction, 4.66x10(-3) microm4 for P-selectin-PSGL-1 interaction, and 0.94x10(-3) microm4 for L-selectin-PSGL-1 interaction. These results elucidate the biophysical mechanism of rosette formation and enable it to become a semiquantitative assay that relates the rosette size to the effective affinity for receptor-ligand binding.

Indexed as

Models, BiologicalAnimalsCell AggregationCells, CulturedCHO CellsComputer SimulationCricetinaeCricetulusErythrocytesHumansModels, StatisticalRosette Formation

Identifiers

PMID16603493
PMCPMC1479068
OpenAlexW1986288547

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.