Evidence map›Paper›PMID 16601699›Full record

ArticleThe EMBO journal2006

Purification of active HOPS complex reveals its affinities for phosphoinositides and the SNARE Vam7p.

Christopher Stroupe, Kevin M Collins, Rutilio A Fratti, William Wickner

Abstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 155 papers.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed.

  1. Article
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  3. Review
  4. Sec18 ATP hydrolysis selectively releases Sec17 fromMolecular biology of the cell · 2025
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  15. PI3P regulates multiple stages of membrane fusion.Molecular biology of the cell · 2023
    Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article

95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Christopher StroupeDepartment of Biochemistry, Dartmouth Medical School, Hanover, NH 03755-3844, USA.
Kevin M Collins
Rutilio A Fratti
William Wickner

Funding

THE ASSEMBLY OF PROTEINS INTO BIOLOGICAL MEMBRANESR01GM023377 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WICKNER, WILLIAM TOBEY · 1985 to 2015
$17.9M
Molecular and Cellular Biology at DartmouthT32GM008704 · NIGMS · DARTMOUTH COLLEGE · PI COMPTON, DUANE A. · 1998 to 2018
$6.8M
Mechanism of action of Ypt7p and the HOPS/VpsC complexF32GM065710 · NIGMS · DARTMOUTH COLLEGE · PI STROUPE, CHRISTOPHER · 2002 to 2004
$134k
THE ASSEMBLY OF PROTEINS INTO BIOLOGICAL MEMBRANESR37GM023377 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WICKNER, WILLIAM TOBEY · 1988 to 1997
–
NIGMS NIH HHS F32 GM065710NIGMS NIH HHS GM08704NIGMS NIH HHS GM23377NIGMS NIH HHS GM65710NIGMS NIH HHS R01 GM023377NIGMS NIH HHS T32 GM008704
6 · The paper itself

Abstract

Coupling of Rab GTPase activation and SNARE complex assembly during membrane fusion is poorly understood. The homotypic fusion and vacuole protein sorting (HOPS) complex links these two processes: it is an effector for the vacuolar Rab GTPase Ypt7p and is required for vacuolar SNARE complex assembly. We now report that pure, active HOPS complex binds phosphoinositides and the PX domain of the vacuolar SNARE protein Vam7p. These binding interactions support HOPS complex association with the vacuole and explain its enrichment at the same microdomains on docked vacuoles as phosphoinositides, Ypt7p, Vam7p, and the other SNARE proteins. Concentration of the HOPS complex at these microdomains may be a key factor for coupling Rab GTPase activation to SNARE complex assembly.

Indexed as

Membrane FusionPhosphatidylinositolsProtein BindingProtein Structure, TertiaryQc-SNARE Proteinsrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSynaptosomal-Associated Protein 25VacuolesPhosphatidylinositolsQc-SNARE Proteinsrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSynaptosomal-Associated Protein 25VAM7 protein, S cerevisiaeYPT7 protein, S cerevisiae

Identifiers

PMID16601699
PMCPMC1440844

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.