Evidence map›Paper›PMID 16601201›Full record

ArticleRNA (New York, N.Y.)2006

KREPA4, an RNA binding protein essential for editosome integrity and survival of Trypanosoma brucei.

Reza Salavati, Nancy Lewis Ernst, Jeff O'Rear, Troy Gilliam, Salvador Tarun, Kenneth Stuart

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. KRGG1 function in RNA editing inRNA (New York, N.Y.) · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. The Architecture of Trypanosoma brucei editosomes.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Inhibitors of RNA editing as potential chemotherapeutics against trypanosomatid pathogens.International journal for parasitology. Drugs and drug resistance · 2012
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Reza SalavatiSeattle Biomedical Research Institute, Washington 98109-5219, USA.
Nancy Lewis Ernst
Jeff O'Rear
Troy Gilliam
Salvador Tarun
Kenneth Stuart
Center for Infectious Disease Research · US

Funding

MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR01AI014102 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI KENNETH D STUART · 1985 to 2026
$20.9M
MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR37AI014102 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 1992 to 2001
$971k
Comparative Analysis of Editosome in TrypanosomatidsR21AI053784 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI SALAVATI, REZA SALAVATI · 2002 to 2003
$537k
NIAID NIH HHS AI053784NIAID NIH HHS AI14102NIAID NIH HHS R01 AI014102NIAID NIH HHS R21 AI053784NIAID NIH HHS R37 AI014102
6 · The paper itself

Abstract

The 20S editosome, a multiprotein complex, catalyzes the editing of most mitochondrial mRNAs in trypanosomatids by uridylate insertion and deletion. RNAi mediated inactivation of expression of KREPA4 (previously TbMP24), a component of the 20S editosome, in procyclic form Trypanosoma brucei resulted in inhibition of cell growth, loss of RNA editing, and disappearance of 20S editosomes. Levels of MRP1 and REAP-1 proteins, which may have roles in editing but are not editosome components, were unaffected. Tagged KREPA4 protein is incorporated into 20S editosomes in vivo with no preference for either insertion or deletion subcomplexes. Consistent with its S1-like motif, recombinant KREPA4 protein binds synthetic gRNA with a preference for the 3' oligo (U) tail. These data suggest that KREPA4 is an RNA binding protein that may be specific for the gRNA Utail and also is important for 20S editosome stability.

Indexed as

RNA EditingAmino Acid MotifsAmino Acid SequenceAnimalsBlotting, WesternElectrophoresis, Polyacrylamide GelElectrophoretic Mobility Shift AssayEscherichia coliHistidineModels, MolecularMolecular Sequence DataProtein Structure, SecondaryProtozoan ProteinsRecombinant Fusion ProteinsReverse Transcriptase Polymerase Chain ReactionRNA-Binding ProteinsHistidineKREPA4 protein, Trypanosoma bruceiProtozoan ProteinsRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, Guide, KinetoplastidaRNA, Protozoan

Identifiers

PMID16601201
PMCPMC1440894
OpenAlexW4232297913

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.