Evidence map›Paper›PMID 16598072›Full record

ArticleNucleic acids research2006

A novel magnetic resonance-based method to measure gene expression in living cells.

Sewon Ki, Fuminori Sugihara, Koji Kasahara, Hidehito Tochio, Azusa Okada-Marubayashi, Setsuko Tomita, Masahito Morita, Mitsunori Ikeguchi, Masahiro Shirakawa, Tetsuro Kokubo

Abstract readEvaluation Study
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Development of Timd2 as a reporter gene for MRI.Magnetic resonance in medicine · 2016
    Article
  3. Article
  4. Detecting enzyme activities with exogenous MRI contrast agents.Chemistry (Weinheim an der Bergstrasse, Germany) · 2014
    Review
  5. Article
  6. Article
  7. MRI reporter genes.Journal of nuclear medicine : official publication, Society of Nuclear Medicine · 2008
    Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sewon KiInternational Graduate School of Arts and Sciences, Yokohama City University, Yokohama 230-0045, Japan.
Fuminori Sugihara
Koji Kasahara
Hidehito Tochio
Azusa Okada-Marubayashi
Setsuko Tomita
Masahito Morita
Mitsunori Ikeguchi
Masahiro Shirakawa
Tetsuro Kokubo

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In unicellular and multicellular eukaryotes, elaborate gene regulatory mechanisms facilitate a broad range of biological processes from cell division to morphological differentiation. In order to fully understand the gene regulatory networks involved in these biological processes, the spatial and temporal patterns of expression of many thousands of genes will need to be determined in real time in living organisms. Currently available techniques are not sufficient to achieve this goal; however, novel methods based on magnetic resonance (MR) imaging may be particularly useful for sensitive detection of gene expression in opaque tissues. This report describes a novel reporter gene system that monitors gene expression dynamically and quantitatively, in yeast cells, by measuring the accumulation of inorganic polyphosphate (polyP) using MR spectroscopy (MRS) or MR spectroscopic imaging (MRI). Because this system is completely non-invasive and does not require exogenous substrates, it is a powerful tool for studying gene expression in multicellular organisms, as well.

Indexed as

Transcription, GeneticBlotting, NorthernGenes, ReporterKineticsMagnetic Resonance ImagingMagnetic Resonance SpectroscopyMolecular ChaperonesPolyphosphatesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsVacuolar Proton-Translocating ATPasesVesicular Transport ProteinsMolecular ChaperonesPolyphosphatesSaccharomyces cerevisiae ProteinsVacuolar Proton-Translocating ATPasesVesicular Transport ProteinsVTC1 protein, S cerevisiae

Identifiers

PMID16598072
PMCPMC1447650

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.