ArticleJournal of clinical microbiology2006
Differentiation of Escherichia coli pathotypes by oligonucleotide spotted array.
Article in Journal of clinical microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
20 citing papers in PubMed, 32 citations in OpenAlex.
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- Nanomaterials to address the genesis of antibiotic resistance inFrontiers in cellular and infection microbiology · 2022Review
- Extraintestinal PathogenicPathogens (Basel, Switzerland) · 2021Review
- Mitigation of endemic GI-tract pathogen-mediated inflammation through development of multimodal treatment regimen and its impact on SIV acquisition in rhesus macaques.PLoS pathogens · 2021Article
- Bird feathers as potential sources of pathogenic microorganisms: a new look at old diseases.Antonie van Leeuwenhoek · 2018Review
- Invasion and translocation of uropathogenic Escherichia coli isolated from urosepsis and patients with community-acquired urinary tract infection.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2018Article
- Article
- Comparison of methods for the enumeration of enterohemorrhagic Escherichia coli from veal hides and carcasses.Frontiers in microbiology · 2015Article
- Assessment of virulence factors characteristic of human Escherichia coli pathotypes and antimicrobial resistance in O157:H7 and non-O157:H7 isolates from livestock in Spain.Applied and environmental microbiology · 2013Article
- Identification of Escherichia coli genes associated with urinary tract infections.Journal of clinical microbiology · 2012Article
- Comparison of phenotypic and genotypic antimicrobial profiles in Escherichia coli and Salmonella enterica from the same dairy cattle farms.Molecular and cellular probes · 2010Article
- Development of a microarray for identification of pathogenic Clostridium spp.Diagnostic microbiology and infectious disease · 2010Article
- Microarray identification of Clostridium difficile core components and divergent regions associated with host origin.Journal of bacteriology · 2009Article
- Potentials and limitations of molecular diagnostic methods in food safety.Genes & nutrition · 2009Article
- Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis.Source code for biology and medicine · 2008Article
- Microarray for molecular typing of Salmonella enterica serovars.Molecular and cellular probes · 2008Article
- Pathotyping Escherichia coli by using miniaturized DNA microarrays.Applied and environmental microbiology · 2007Article
- Microarrays in infection and immunity.Current opinion in chemical biology · 2007Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 4 institutions in 1 country.
Funding
Abstract
To accurately determine the pathotypes of Escherichia coli strains, a comprehensive assessment of each strain that targets multiple genes is required. A new approach to the identification and characterization of E. coli pathotypes was developed by constructing gene-specific probes (70-mers) for not only the virulence genes associated with each E. coli pathotype but also the O157-, CFT073-, and K-12-specific and common genes of each pathotype. Analysis of oligonucleotide probes with reference and clinical isolates of E. coli pathotypes indicated that the array could differentiate the pathotypes on the basis of their virulence and specific gene patterns. Probes targeting common genes of E. coli were present in all the reference and clinical strains. Salmonella enterica subsp. enterica-specific genes and Salmonella core genes were used as negative controls. The entire E. coli pathotype showed reactivity to only 4 of the 81 Salmonella-specific gene probes. Characterization of the genetic and virulence profiles of a single strain by using probes for virulence factors and specific and common genes in the spotted array is an ideal diagnostic tool for determination of E. coli pathotypes and could also have a significant impact on the epidemiological analysis of E. coli infections.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.