Evidence map›Paper›PMID 16597869›Full record

ArticleJournal of clinical microbiology2006

Use of TaqMan real-time reverse transcription-PCR for rapid detection, quantification, and typing of norovirus.

A Angelica Trujillo, Karen A McCaustland, Du-Ping Zheng, Leslie A Hadley, George Vaughn, Susan M Adams, Tamie Ando, Roger I Glass, Stephan S Monroe

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 249 citations in OpenAlex.

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  18. A swimming pool-associated outbreak of pharyngoconjunctival fever caused by human adenovirus type 4 in Beijing, China.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2018
    Article
  19. Article
  20. Syndromic Panel-Based Testing in Clinical Microbiology.Clinical microbiology reviews · 2018
    Review

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

A Angelica TrujilloNational Center for Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA. Atrujillo@cdc.gov
Karen A McCaustland
Du-Ping Zheng
Leslie A Hadley
George Vaughn
Susan M Adams
Tamie Ando
Roger I Glass
Stephan S Monroe
National Center for Infectious Diseases · USCenters for Disease Control and Prevention · USAtlanta Research and Education Foundation · USNational Center for Environmental Health · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Noroviruses (NoVs) are the most commonly identified cause of outbreaks and sporadic cases of acute gastroenteritis. We evaluated and optimized NoV-specific TaqMan real-time reverse transcription (RT)-PCR assays for the rapid detection and typing of NoV strains belonging to genogroups GI and GII and adapted them to the LightCycler platform. We expanded the detection ability of the assays by developing an assay that detects the GIV NoV strain. The assays were validated with 92 clinical samples and 33 water samples from confirmed NoV outbreaks and suspected NoV contamination cases. The assays detected NoV RNA in all of the clinical specimens previously confirmed positive by conventional RT-PCR and sequencing. Additionally, the TaqMan assays successfully detected NoV RNA in water samples containing low viral concentrations and inhibitors of RT and/or PCR, whereas the conventional method with region B primers required dilution of the inhibitors. By means of serially diluted NoV T7 RNA transcripts, a potential detection limit of <10 transcript copies per reaction mixture was observed with the GII assay and a potential detection limit of <100 transcript copies per reaction mixture was observed with the GI assay. These results and the ability to detect virus in water that was negative by RT-PCR demonstrate the higher sensitivity of the TaqMan assay compared with that of a conventional RT-PCR assay. The TaqMan methods dramatically decrease the turnaround time by eliminating post-PCR processing. These assays have proven useful in assisting scientists in public health and diagnostic laboratories report findings quickly to outbreak management teams.

Indexed as

Caliciviridae InfectionsDisease OutbreaksFecesGastroenteritisNorovirusPhylogenyReverse Transcriptase Polymerase Chain ReactionSensitivity and SpecificityTaq PolymeraseTaq Polymerase

Identifiers

PMID16597869
PMCPMC1448641
OpenAlexW2160892122

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.