Evidence map›Paper›PMID 16585764›Full record

ArticleJournal of bacteriology2006

Detailed genomic analysis of the Wbeta and gamma phages infecting Bacillus anthracis: implications for evolution of environmental fitness and antibiotic resistance.

Raymond Schuch, Vincent A Fischetti

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 106 citations in OpenAlex.

  1. Article
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  13. A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Article
  15. Engineered Bacteriophage Therapeutics: Rationale, Challenges and Future.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2021
    Review
  16. Frontiers in microbiology · 2021
    Article
  17. Review
  18. Rapid Microscopic Detection ofMicroorganisms · 2020
    Article
  19. Article
  20. New GenusViruses · 2019
    Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Raymond SchuchLaboratory of Bacterial Pathogenesis and Immunology, The Rockefeller University, New York, NY 10021, USA. schuchr@rockefeller.edu
Vincent A Fischetti
Rockefeller University · US

Funding

Isolaton of new phage enzymes to kill B. anthracisR01AI057472 · NIAID · ROCKEFELLER UNIVERSITY · PI FISCHETTI, VINCENT A. · 2004 to 2014
$3.9M
NIAID NIH HHS AI 057472NIAID NIH HHS R01 AI057472
6 · The paper itself

Abstract

Phage-mediated lysis has been an essential laboratory tool for rapidly identifying Bacillus anthracis for more than 40 years, relying on the gamma phage derivative of a Bacillus cereus prophage called W. The complete genomic sequences of the temperate W phage, referred to as Wbeta, and its lytic variant gamma were determined and found to encode 53 open reading frames each, spanning 40,864 bp and 37,373 bp, respectively. Direct comparison of the genomes showed that gamma evolved through mutations at key loci controlling host recognition, lysogenic growth, and possibly host phenotypic modification. Included are a cluster of point mutations at the gp14 tail fiber locus of gamma, encoding a protein that, when fused to green fluorescent protein, binds specifically to B. anthracis. A large 2,003-bp deletion was also identified at the gamma lysogeny module, explaining its shift from a temperate to a lytic lifestyle. Finally, evidence of recombination was observed at a dicistronic Wbeta locus, encoding putative bacterial cell surface-modifying proteins, replaced in gamma with a locus, likely obtained from a B. anthracis prophage, encoding demonstrable fosfomycin resistance. Reverse transcriptase PCR analysis confirmed strong induction at the dicistronic Wbeta locus and at four other phage loci in B. anthracis and/or B. cereus lysogens. In all, this study represents the first genomic and functional description of two historically important phages and is part of a broader investigation into contributions of phage to the B. anthracis life cycle. Initial findings suggest that lysogeny of B. anthracis promotes ecological adaptation, rather than virulence, as with other gram-positive pathogens.

Indexed as

Evolution, MolecularGenome, ViralAmino Acid SequenceAnti-Bacterial AgentsBacillus anthracisBacillus PhagesBacterial ProteinsDNA, ViralDrug Resistance, BacterialFosfomycinGene Expression Regulation, ViralGlutathione TransferaseLysogenyMolecular Sequence DataMutationOpen Reading FramesAnti-Bacterial AgentsBacterial ProteinsDNA, ViralFosfomycinGlutathione TransferaseRNA, MessengerRNA, ViralViral Proteins

Identifiers

PMID16585764
PMCPMC1446989
OpenAlexW2122450519

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.