Evidence map›Paper›PMID 16585509›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes.

Raul Alvarez-Venegas, Monther Sadder, Andrej Hlavacka, Frantisek Baluska, Yuannan Xia, Guoqing Lu, Alexey Firsov, Gautam Sarath, Hideaki Moriyama, Joseph G Dubrovsky and 1 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
22.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 158 citations in OpenAlex.

  1. Article
  2. Review
  3. Exploring lipid-protein interactions in plant membranes.Journal of experimental botany · 2024
    Review
  4. When PIPFrontiers in cell and developmental biology · 2022
    Review
  5. Article
  6. The function of histone lysine methylation related SET domain group proteins in plants.Protein science : a publication of the Protein Society · 2020
    Review
  7. Article
  8. Review
  9. Review
  10. The Histone Demethylase IBM1 Positively RegulatesFrontiers in plant science · 2019
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Exploring phosphatidylinositol 5-phosphate 4-kinase function.Advances in biological regulation · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 5 countries.

Raul Alvarez-VenegasSchool of Biological Sciences, University of Nebraska, Lincoln, NE 68588-0118, USA.
Monther Sadder
Andrej Hlavacka
Frantisek Baluska
Yuannan Xia
Guoqing Lu
Alexey Firsov
Gautam Sarath
Hideaki Moriyama
Joseph G Dubrovsky
Zoya Avramova
University of Nebraska–Lincoln · USUniversity of Bonn · DEGenomics (United Kingdom) · GBUniversidad Nacional Autónoma de México · MXUniversity of Jordan · JO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Arabidopsis homolog of trithorax, ATX1, regulates numerous functions in Arabidopsis beyond the homeotic genes. Here, we identified genome-wide targets of ATX1 and showed that ATX1 is a receptor for a lipid messenger, phosphatidylinositol 5-phosphate, PI5P. PI5P negatively affects ATX1 activity, suggesting a regulatory pathway connecting lipid-signaling with nuclear functions. We propose a model to illustrate how plants may respond to stimuli (external or internal) that elevate cellular PI5P levels by altering expression of ATX1-controlled genes.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantHistone-Lysine N-MethyltransferaseModels, MolecularMolecular Sequence DataPhosphatidylinositol PhosphatesProtein ConformationTranscription FactorsArabidopsis ProteinsAt2g31650 protein, ArabidopsisHistone-Lysine N-Methyltransferasephosphatidylinositol 5-phosphatePhosphatidylinositol PhosphatesTranscription Factors

Identifiers

PMID16585509
PMCPMC1458695
OpenAlexW2031108527

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.