Evidence map›Paper›PMID 16581846›Full record

ArticleBiophysical journal2006

Origins of proton transport behavior from selectivity domain mutations of the aquaporin-1 channel.

Hanning Chen, Yujie Wu, Gregory A Voth

Abstract readLetter
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Nanoscale Ion Pump Derived from a Biological Water Channel.The journal of physical chemistry. B · 2017
    Article
  5. Article
  6. Review
  7. Article
  8. Aquaporins: important but elusive drug targets.Nature reviews. Drug discovery · 2014
    Review
  9. Article
  10. Review
  11. Computationally Efficient Multiconfigurational Reactive Molecular Dynamics.Journal of chemical theory and computation · 2012
    Article
  12. Gating pore currents and the resting state of Nav1.4 voltage sensor domains.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  13. Article
  14. Article
  15. Aquaporins as gas channels.Pflugers Archiv : European journal of physiology · 2011
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Electrostatics of aquaporin and aquaglyceroporin channels correlates with their transport selectivity.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Hanning Chen
Yujie Wu
Gregory A Voth

Funding

SIMULATIONS OF PROTON TRANSLOCATION IN BIOMOLECULESR01GM053148 · NIGMS · UNIVERSITY OF UTAH · PI VOTH, GREGORY A. · 1996 to 2021
$5.3M
NIGMS NIH HHS R01 GM053148NIGMS NIH HHS R01-GM53148
6 · The paper itself

Abstract

The permeation free-energy profile and maximum ion conductance of proton transport along the channel of three aquaporin-1 (AQP1) mutants (H180A/R195V, H180A, and R195V) are calculated via molecular dynamics simulations and Poisson-Nernst-Planck theory. The proton dynamics was described by the multistate empirical valence bond (MS-EVB) model. The results reveal three major contributions to the overall free-energy barrier for proton transport in AQP1: 1), the bipolar field, 2), the electrostatic repulsion due to the Arg-195 residue, and 3), the dehydration penalty due to the narrow channel pore. The double mutation (H180A/R195V) drastically drops the overall free-energy barrier by roughly 20 kcal/mol via simultaneously relaxing the direct electrostatic interaction (by R195V) and dehydration effect (by H180A).

Indexed as

Ion Channel GatingModels, ChemicalModels, MolecularProtonsAmino Acid SubstitutionAquaporin 1Cell MembraneComputer SimulationMutagenesis, Site-DirectedPorosityProtein ConformationProtein Structure, TertiaryStructure-Activity RelationshipAquaporin 1Protons

Identifiers

PMID16581846
PMCPMC1440765

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.