Evidence map›Paper›PMID 16581798›Full record

ArticleMolecular and cellular biology2006

Structure and function of the Saccharomyces cerevisiae Sir3 BAH domain.

Jessica J Connelly, Peihua Yuan, Hao-Chi Hsu, Zhizhong Li, Rui-Ming Xu, Rolf Sternglanz

Open access · greenAbstract readComparative Study
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
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  5. Histone Readers and Their Roles in Cancer.Cancer treatment and research · 2023
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  11. Adaptive Roles ofG3 (Bethesda, Md.) · 2017
    Article
  12. Review
  13. Article
  14. Article
  15. Nucleosome structure and function.Chemical reviews · 2015
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jessica J ConnellyW. M. Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA .
Peihua Yuan
Hao-Chi Hsu
Zhizhong Li
Rui-Ming Xu
Rolf Sternglanz
Cold Spring Harbor Laboratory · USStony Brook University · US

Funding

STRUCTURE STUDIES OF TRANSCRIPTIONAL SILENCINGR01GM063716 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI XU, RUI-MING · 2001 to 2010
$2.9M
PROTEINS AND ENZYMES AFFECTING CHROMATINR01GM028220 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI STERNGLANZ, ROLF · 1985 to 2006
$2.4M
Proteins and Enzymes Affecting ChromatinR56GM028220 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI STERNGLANZ, ROLF · 2007 to 2007
$387k
NIGMS NIH HHS GM 28220NIGMS NIH HHS GM 63716NIGMS NIH HHS R01 GM028220NIGMS NIH HHS R01 GM063716NIGMS NIH HHS R56 GM028220
6 · The paper itself

Abstract

Previous work has shown that the N terminus of the Saccharomyces cerevisiae Sir3 protein is crucial for the function of Sir3 in transcriptional silencing. Here, we show that overexpression of N-terminal fragments of Sir3 in strains lacking the full-length protein can lead to some silencing of HML and HMR. Sir3 contains a BAH (bromo-adjacent homology) domain at its N terminus. Overexpression of this domain alone can lead to silencing as long as Sir1 is overexpressed and Sir2 and Sir4 are present. Overexpression of the closely related Orc1 BAH domain can also silence in the absence of any Sir3 protein. A previously characterized hypermorphic sir3 mutation, D205N, greatly improves silencing by the Sir3 BAH domain and allows it to bind to DNA and oligonucleosomes in vitro. A previously uncharacterized region in the Sir1 N terminus is required for silencing by both the Sir3 and Orc1 BAH domains. The structure of the Sir3 BAH domain has been determined. In the crystal, the molecule multimerizes in the form of a left-handed superhelix. This superhelix may be relevant to the function of the BAH domain of Sir3 in silencing.

Indexed as

Amino Acid SequenceBinding SitesChromatin ImmunoprecipitationConserved SequenceCrystallography, X-RayDimerizationEscherichia coliGene SilencingHistidineModels, MolecularMolecular Sequence DataNucleosomesPlasmidsPoint MutationProtein BindingProtein Structure, TertiaryHistidineNucleosomesRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR3 protein, S cerevisiae

Identifiers

PMID16581798
PMCPMC1446965
OpenAlexW2138079393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.