ArticlePlanta2006
Timecourse microarray analyses reveal global changes in gene expression of susceptible Glycine max (soybean) roots during infection by Heterodera glycines (soybean cyst nematode).
Article in Planta, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
68 citing papers in PubMed, 147 citations in OpenAlex.
- Hijacking the Host Clock: A Nematode Effector Antagonizes Soybean Circadian Defense and Translation Control.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Article
- Breeding for next-generation biotic stress-tolerant pigeonpea for sustainable food legume production.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Basal Differences in the Transcriptional Profiles of Tomato Roots Associated with the Presence/Absence of the Resistance GenePlants (Basel, Switzerland) · 2026Article
- The negative regulated immune mechanism of Skp1-Cullin1-F-box (SCF) E3 ubiquitin ligase-mediated HOS15-dependent responses in banana.Plant cell reports · 2025Article
- Identification of genes governing resistance to PCN (Globodera rostochiensis) through transcriptome analysis in Solanum tuberosum.Functional & integrative genomics · 2023Article
- Multi-omics assisted breeding for biotic stress resistance in soybean.Molecular biology reports · 2023Review
- Weighted gene co-expression network analysis identifies genes related to HG Type 0 resistance and verification of hub geneFrontiers in plant science · 2022Article
- Comparisons of constitutive resistances to soybean cyst nematode between PI 88788- and Peking-type sources of resistance in soybean by transcriptomic and metabolomic profilings.Frontiers in genetics · 2022Article
- Tomato Divinyl Ether-Biosynthesis Pathway Is Implicated in Modulating of Root-Knot NematodeFrontiers in plant science · 2021Article
- Legumes Protease Inhibitors as Biopesticides and Their Defense Mechanisms against Biotic Factors.International journal of molecular sciences · 2020Review
- Modulation ofPlants (Basel, Switzerland) · 2020Article
- Early transcriptional responses to soybean cyst nematode HG Type 0 show genetic differences among resistant and susceptible soybeans.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Homeostasis in the soybean miRNA396-GRF network is essential for productive soybean cyst nematode infections.Journal of experimental botany · 2019Article
- Transcriptional profiling of wheat (Triticum aestivum L.) during a compatible interaction with the cereal cyst nematode Heterodera avenae.Scientific reports · 2019Article
- Soybean root transcriptome profiling reveals a nonhost resistant response during Heterodera glycines infection.PloS one · 2019Article
- Genomics of Plant Disease Resistance in Legumes.Frontiers in plant science · 2019Review
- The root-knot nematode Meloidogyne incognita produces a functional mimic of the Arabidopsis INFLORESCENCE DEFICIENT IN ABSCISSION signaling peptide.Journal of experimental botany · 2018Article
- Transcriptomic and metabolomic analyses reveal that bacteria promote plant defense during infection of soybean cyst nematode in soybean.BMC plant biology · 2018Article
- Transcriptional responses of wheat and the cereal cyst nematode Heterodera avenae during their early contact stage.Scientific reports · 2017Article
- Gene expression analysis in Musa acuminata during compatible interactions with Meloidogyne incognita.Annals of botany · 2017Article
8 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Changes in gene expression within roots of Glycine max (soybean), cv. Kent, susceptible to infection by Heterodera glycines (the soybean cyst nematode [SCN]), at 6, 12, and 24 h, and 2, 4, 6, and 8 days post-inoculation were monitored using microarrays containing more than 6,000 cDNA inserts. Replicate, independent biological samples were examined at each time point. Gene expression was analyzed statistically using T-tests, ANOVA, clustering algorithms, and online analytical processing (OLAP). These analyses allow the user to query the data in several ways without importing the data into third-party software. RT-PCR confirmed that WRKY6 transcription factor, trehalose phosphate synthase, EIF4a, Skp1, and CLB1 were differentially induced across most time-points. Other genes induced across most timepoints included lipoxygenase, calmodulin, phospholipase C, metallothionein-like protein, and chalcone reductase. RT-PCR demonstrated enhanced expression during the first 12 h of infection for Kunitz trypsin inhibitor and sucrose synthase. The stress-related gene, SAM-22, phospholipase D and 12-oxophytodienoate reductase were also induced at the early time-points. At 6 and 8 dpi there was an abundance of transcripts expressed that encoded genes involved in transcription and protein synthesis. Some of those genes included ribosomal proteins, and initiation and elongation factors. Several genes involved in carbon metabolism and transport were also more abundant. Those genes included glyceraldehyde 3-phosphate dehydrogenase, fructose-bisphosphate aldolase and sucrose synthase. These results identified specific changes in gene transcript levels triggered by infection of susceptible soybean roots by SCN.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.