Evidence map›Paper›PMID 16568337›Full record

ArticleFunctional & integrative genomics2006

Single nucleotide polymorphism, genetic mapping, and expression of genes coding for the DOF wheat prolamin-box binding factor.

Catherine Ravel, Ila J Nagy, Pierre Martre, Pierre Sourdille, Mireille Dardevet, François Balfourier, Caroline Pont, Sandra Giancola, Sébastien Praud, Gilles Charmet

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Functional & integrative genomics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  3. Review
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  5. Review
  6. Article
  7. Identification of the Core Pollen-Specific Regulation in the RiceInternational journal of molecular sciences · 2020
    Article
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  10. Article
  11. Article
  12. Review
  13. QTL mapping for quantities of protein fractions in bread wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Genomic regions influencing gene expression of the HMW glutenins in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Catherine RavelInstitu National de la Recherche Agronomique (INRA), UMR1095, Amélioration et Santé des Plantes, 234 avenue du Brezet, Clermont-Ferrand 63039, France. ravel@clermont.inra.fr
Ila J Nagy
Pierre Martre
Pierre Sourdille
Mireille Dardevet
François Balfourier
Caroline Pont
Sandra Giancola
Sébastien Praud
Gilles Charmet

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wheat prolamin-box binding factor (WPBF) was shown to be an activator of Triticum aestivum L. storage protein genes. Three homoeologous genes encoding this transcription factor were isolated from a bacterial artificial chromosome genomic library and sequenced. The genes all have two exons separated by an intron of approximately 1,000 bp where the second exon contains the entire coding sequence. Many differences were found between homoeologous sequences, but none of them is predicted to significantly alter the sequence of the putative encoded protein. The three homoeologous genes are specifically expressed in grain from 3 to 39 days after anthesis. The allelic variation of a genetically diverse collection of 27 bread wheat lines was assessed. One, five, and one single-nucleotide polymorphisms (SNPs) were detected in the wPbf genes for the A, B, and D genomes, respectively. Physical and genetic mapping utilizing some of the SNPs identified confirmed that wPbf genes are located close to the centromeres on the homoeologous group 5 chromosomes. The low level of allelic diversity found in wPbf genes may suggest that these genes play a key role and are thus constrained by selection.

Indexed as

Polymorphism, Single NucleotideAmino Acid SequenceBase SequenceChromosome MappingChromosomes, PlantDNA-Binding ProteinsGene ExpressionGene Expression Regulation, DevelopmentalGenes, PlantGenetic VariationGenome, PlantMolecular Sequence DataPlant ProteinsSequence Homology, Nucleic AcidTranscription FactorsTriticumDNA-Binding ProteinsPBF protein, plantPlant ProteinsTranscription Factors

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.