Evidence map›Paper›PMID 16568269›Full record

ArticleEuropean biophysics journal : EBJ2006

Initial guesses generation for Fluorescence Intensity Distribution Analysis.

Victor V Skakun, Eugene G Novikov, Vladimir V Apanasovich, Hans J Tanke, André M Deelder, Oleg A Mayboroda

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Article in European biophysics journal : EBJ, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 · Who and what money

Authors and funding

6 authors.

Victor V SkakunDepartment of Parasitology, Leiden University Medical Centre, Leiden, The Netherlands.
Eugene G Novikov
Vladimir V Apanasovich
Hans J Tanke
André M Deelder
Oleg A Mayboroda

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The growing number of applications of Fluorescence Intensity Distribution Analysis (FIDA) demands for new approaches in data processing, aiming at increased speed and robustness. Iterative algorithms of parameter estimation, although proven to be universal and accurate, require some initial guesses (IG) of the unknown parameters. An essential component of any data processing technology, IG become especially important in case of FIDA, since even with apparently reasonable, and physically admissible but randomly chosen IG, the iterative procedure may converge to situations where the FIDA model cannot be evaluated correctly. In the present work we introduce an approach for IG generation in FIDA experiments based on the method of moments. IG are generated for the sample parameters: brightness, concentration, and for the parameters related to experimental set-up: background, observation volume profile. A number of analytical simplifications were introduced in order to increase the accuracy and robustness of the numerical algorithms. The performance of the developed method has been tested on number of simulations and experimental data. Iterative fitting with generated IG proved to be more robust and at least five times faster than with an arbitrarily chosen IG. Applicability of the proposed method for quick estimation of brightness and concentrations is discussed.

Indexed as

AlgorithmsCell Physiological PhenomenaData Interpretation, StatisticalModels, BiologicalBiopolymersComputer SimulationModels, StatisticalSpectrometry, FluorescenceBiopolymers

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.