ReviewThe European physical journal. E, Soft matter2006
Loops in DNA: an overview of experimental and theoretical approaches.
Review in The European physical journal. E, Soft matter, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
23 citing papers in PubMed, 65 citations in OpenAlex.
- Revealing thermodynamics of DNA origami folding via affine transformations.Nucleic acids research · 2020Article
- Strongly Bent Double-Stranded DNA: Reconciling Theory and Experiment.Frontiers in physics · 2019Article
- A modular DNA scaffold to study protein-protein interactions at single-molecule resolution.Nature nanotechnology · 2019Article
- Pseudomonas aeruginosa AmrZ Binds to Four Sites in the algD Promoter, Inducing DNA-AmrZ Complex Formation and Transcriptional Activation.Journal of bacteriology · 2016Article
- Single-molecule fluorescence studies on DNA looping.Methods (San Diego, Calif.) · 2016Article
- Force distribution in a semiflexible loop.Physical review. E · 2016Article
- Using synthetic bacterial enhancers to reveal a looping-based mechanism for quenching-like repression.Nature communications · 2016Article
- Protein-Assisted DNA Looping: A Delicate Balance among Interactions, Mechanics, and Entropy.Biophysical journal · 2015Article
- Interplay of Protein Binding Interactions, DNA Mechanics, and Entropy in DNA Looping Kinetics.Biophysical journal · 2015Article
- Role of microscopic flexibility in tightly curved DNA.The journal of physical chemistry. B · 2014Article
- Probing transient protein-mediated DNA linkages using nanoconfinement.Biomicrofluidics · 2014Article
- Probing the elastic limit of DNA bending.Nucleic acids research · 2014Article
- Non-Markovian polymer reaction kinetics.Nature chemistry · 2012Article
- Stretching short sequences of DNA with constant force axial optical tweezers.Journal of visualized experiments : JoVE · 2011Article
- Quantitative methods for measuring DNA flexibility in vitro and in vivo.Methods in enzymology · 2011Article
- DNA curvature and flexibility in vitro and in vivo.Quarterly reviews of biophysics · 2010Review
- Dynamics and consequences of DNA looping by the FokI restriction endonuclease.Nucleic acids research · 2008Article
- A switch in the mechanism of communication between the two DNA-binding sites in the SfiI restriction endonuclease.Journal of molecular biology · 2007Article
- Probability of the site juxtaposition determines the rate of protein-mediated DNA looping.Biophysical journal · 2007Article
- Protein-induced local DNA bends regulate global topology of recombination products.Journal of molecular biology · 2007Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
DNA loop formation plays a central role in many cellular processes. The aim of this paper is to present the state of the art and open problems regarding the experimental and theoretical approaches to DNA looping. A particular attention is devoted to the effects of the protein bridge size and of protein induced sharp DNA bending on DNA loop formation enhancement.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.