Evidence map›Paper›PMID 16554554›Full record

ArticleNucleic acids research2006

A TFIIB-like protein is indispensable for spliced leader RNA gene transcription in Trypanosoma brucei.

Bernd Schimanski, Jens Brandenburg, Tu Ngoc Nguyen, Melissa Jo Caimano, Arthur Günzl

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Transcription Factor Analysis in Trypanosomatids.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
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  10. Review
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Bernd SchimanskiDepartment of Genetics and Developmental Biology, University of Connecticut Health Center, Farmington, CT 06030, USA.
Jens Brandenburg
Tu Ngoc Nguyen
Melissa Jo Caimano
Arthur Günzl
UConn Health · US

Funding

RpoS Regulation of Borrelia burgdorferi Genes in vivoR01AI029735 · NIAID · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI CAIMANO, MELISSA J, RADOLF, JUSTIN D · 1990 to 2022
$10.7M
Multifunctional class I transcription in T. bruceiR01AI059377 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GUNZL, ARTHUR · 2004 to 2013
$3.4M
RpoS Regulation of Borrelia burgdorferi Genes in vivoR56AI029735 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI RADOLF, JUSTIN D · 2012 to 2012
$536k
NIAID NIH HHS AI059377NIAID NIH HHS AI-29735NIAID NIH HHS R01 AI029735NIAID NIH HHS R01 AI059377NIAID NIH HHS R56 AI029735Wellcome Trust
6 · The paper itself

Abstract

The lack of general class II transcription factors was a hallmark of the genomic sequences of the human parasites Trypanosoma brucei, Trypanosoma cruzi and Leishmania major. However, the recent identification of TFIIA as part of a protein complex essential for RNA polymerase II-mediated transcription of SLRNA genes, which encode the trans splicing-specific spliced leader RNA, suggests that trypanosomatids assemble a highly divergent set of these factors at the SLRNA promoter. Here we report the identification of a trypanosomatid TFIIB-like (TFIIB(like)) protein which has limited overall sequence homology to eukaryotic TFIIB and archaeal TFB but harbors conserved residues within the N-terminal zinc ribbon domain, the B finger and cyclin repeat I. In accordance with the function of TFIIB, T.brucei TFIIB(like) is encoded by an essential gene, localizes to the nucleus, specifically binds to the SLRNA promoter, interacts with RNA polymerase II, and is absolutely required for SLRNA transcription.

Indexed as

Amino Acid SequenceAnimalsCell LineCell NucleusGene SilencingGenes, LethalMolecular Sequence DataPromoter Regions, GeneticProtozoan ProteinsRNA Polymerase IIRNA, ProtozoanRNA, Spliced LeaderSequence AlignmentTranscription Factor TFIIBTranscription, GeneticTrans-SplicingProtozoan ProteinsRNA Polymerase IIRNA, ProtozoanRNA, Spliced LeaderTranscription Factor TFIIB

Identifiers

PMID16554554
PMCPMC1409817
OpenAlexW2045828490

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.