Evidence map›Paper›PMID 16554411›Full record

ArticleGenetics2006

Nonallelic interactions between het-c and a polymorphic locus, pin-c, are essential for nonself recognition and programmed cell death in Neurospora crassa.

Isao Kaneko, Karine Dementhon, Qijun Xiang, N Louise Glass

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
7.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Genome Analysis of the Broad Host Range NecrotrophFrontiers in plant science · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Programmed Cell Death inGenetics · 2019
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Isao KanekoDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA.
Karine Dementhon
Qijun Xiang
N Louise Glass
University of California, Berkeley · US

Funding

ANALYSIS OF PROGRAMMED CELL DEATH IN FILAMENTOUS FUNGIR01GM060468 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI GLASS, N LOUISE · 2000 to 2014
$3.6M
NIGMS NIH HHS R01 GM060468NIGMS NIH HHS R01 GM60468
6 · The paper itself

Abstract

Nonself recognition in filamentous fungi is conferred by genetic differences at het (heterokaryon incompatibility) loci. When individuals that differ in het specificity undergo hyphal fusion, the heterokaryon undergoes a programmed cell death reaction or is highly unstable. In Neurospora crassa, three allelic specificities at the het-c locus are conferred by a highly polymorphic domain. This domain shows trans-species polymorphisms indicative of balancing selection, consistent with the role of het loci in nonself recognition. We determined that a locus closely linked to het-c, called pin-c (partner for incompatibility with het-c) was required for het-c nonself recognition and heterokaryon incompatibility (HI). The pin-c alleles in isolates that differ in het-c specificity were extremely polymorphic. Heterokaryon and transformation tests showed that nonself recognition was mediated by synergistic nonallelic interactions between het-c and pin-c, while allelic interactions at het-c increased the severity of the HI phenotype. The pin-c locus encodes a protein containing a HET domain; predicted proteins containing HET domains are frequent in filamentous ascomycete genomes. These data suggest that nonallelic interactions may be important in nonself recognition in filamentous fungi and that proteins containing a HET domain may be a key factor in these interactions.

Indexed as

AllelesPolymorphism, GeneticAmino Acid SequenceApoptosisFungal ProteinsGenetic MarkersMolecular Sequence DataMutationNeurospora crassaProtein Structure, TertiarySequence AlignmentTemperatureFungal ProteinsGenetic Markers

Identifiers

PMID16554411
PMCPMC1456284
OpenAlexW2106404831

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.