Evidence map›Paper›PMID 16553875›Full record

ArticleMolecular microbiology2006

In vivo and in vitro studies of Chlamydia trachomatis TrpR:DNA interactions.

John H Carlson, Heidi Wood, Christine Roshick, Harlan D Caldwell, Grant McClarty

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 36 citations in OpenAlex.

  1. Metabolism and physiology of pathogenic bacterial obligate intracellular parasites.Frontiers in cellular and infection microbiology · 2024
    Review
  2. Diversity of σJournal of bacteriology · 2023
    Article
  3. Molecular pathogenesis ofFrontiers in cellular and infection microbiology · 2023
    Review
  4. Review
  5. The role of tryptophan inFrontiers in cellular and infection microbiology · 2022
    Review
  6. Article
  7. Article
  8. The Repressor Function of theJournal of bacteriology · 2020
    Article
  9. HowProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Ammonia generation by tryptophan synthase drives a key genetic difference between genital and ocularProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. Article
  12. Article
  13. Ironing Out the Unconventional Mechanisms of Iron Acquisition and Gene Regulation inFrontiers in cellular and infection microbiology · 2017
    Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

John H CarlsonLaboratory of Intracellular Parasites, Rocky Mountain Laboratories, NIAID, National Institutes of Health, Hamilton, MT 59840, USA.
Heidi Wood
Christine Roshick
Harlan D Caldwell
Grant McClarty
University of Manitoba · CA

Funding

Pathogensis of Chlamydial InfectionZIAAI000845 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI CALDWELL, HARLAN D · 2009 to 2022
$14.8M
Chlamydial Immunity and Vaccine DevelopmentZIAAI000672 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI CALDWELL, HARLAN D · 2009 to 2016
$6.8M
PATHOGENOMICS OF CHLAMYDIAL INFECTIONZ01AI000845 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI CALDWELL, HARLAN D · 1999 to 2008
$1.6M
MUCOSAL IMMUNITY TO CHLAMYDIAL INFECTIONZ01AI000672 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI CALDWELL, HARLAN D · 1993 to 2008
$1.4M
Intramural NIH HHS Z01 AI000672Intramural NIH HHS Z01 AI000845
6 · The paper itself

Abstract

We previously reported that Chlamydia trachomatis expresses the genes encoding tryptophan synthase (trpBA) and the tryptophan repressor (trpR). Here we employ primer extension analysis to identify the transcriptional origins of both trpR and trpBA, allowing for the identification of the putative operator sequences for both trpR and trpBA. Moreover we demonstrate that native recombinant chlamydial TrpR binds to the predicted operator sequence upstream of trpR. A restriction endonuclease protection assay was designed and used to demonstrate that 5-fluorotryptophan was the only tryptophan analogue capable of activating binding of native recombinant chlamydial TrpR to its operator. Additionally, 5-fluorotryptophan was the only analogue that repressed expression of trpBA at a level analogous to L-tryptophan itself. Based on these findings, a mutant selection protocol was designed and a C. trachomatis isolate containing a frameshift mutation in trpR was isolated. This chlamydial mutant synthesizes a truncated TrpR protein that cannot regulate expression of trpBA and trpR in response to changes in tryptophan levels. These findings provide the first genetic proof that TrpR acts as a negative regulator of transcription in C. trachomatis.

Indexed as

Gene Expression Regulation, BacterialOperator Regions, GeneticAmino Acid SequenceBacterial ProteinsBase SequenceChlamydia trachomatisDNA, BacterialEscherichia coli ProteinsGene ExpressionMolecular Sequence DataMutagenesisMutationRegulonRepressor ProteinsTryptophanTryptophan Synthase5-fluorotryptophanBacterial ProteinsDNA, BacterialEscherichia coli ProteinsRepressor ProteinsTRPR protein, E coliTryptophanTryptophan Synthase

Identifiers

PMID16553875
PMCPMC2808116
OpenAlexW2019734698

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.