Evidence map›Paper›PMID 16552065›Full record

ArticleInfection and immunity2006

Functional genomics of innate host defense molecules in normal human monocytes in response to Aspergillus fumigatus.

Karoll J Cortez, Caron A Lyman, Shyam Kottilil, Hee Sup Kim, Emmanuel Roilides, Jun Yang, Brandie Fullmer, Richard Lempicki, Thomas J Walsh

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00923832 (Early Molecular Detection for the Improved Diagnosis of Invasive Pulmonary Aspergillosis and Invasive Pulmonary Zygomycosis), which is not on this map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00923832 completednot on this mapstarted 2009, after this paper: background citation

Early Molecular Detection for the Improved Diagnosis of Invasive Pulmonary Aspergillosis and Invasive Pulmonary Zygomycosis

TypeobservationalSponsorNational Cancer Institute (NCI)Ran2009 to 2009ConditionsImmunocompromised Host, Invasive Pulmonary Fungal Infection, Invasive Pulmonary Aspergillosis, Invasive Pulmonary Zygomycosis
3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
  2. Interplay of Cytokines and Chemokines in Aspergillosis.Journal of fungi (Basel, Switzerland) · 2024
    Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Immune Cell Paracrine Signaling Drives the Neutrophil Response toCellular and molecular bioengineering · 2021
    Article
  8. Monocytes and the Host Response to Fungal Pathogens.Frontiers in cellular and infection microbiology · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. A New Method for Reactivating and Expanding T Cells Specific forMolecular therapy. Methods & clinical development · 2018
    Article
  13. Article
  14. Early expression of PTX3 inInternational journal of ophthalmology · 2018
    Article
  15. Article
  16. Review
  17. Article
  18. Rab GTPases in Immunity and Inflammation.Frontiers in cellular and infection microbiology · 2017
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Karoll J CortezImmunocompromised Host Section, Pediatric Oncology Branch, National Cancer Institute, NIH, 10 Center Drive, CRC Rm. 1-5250, Bethesda, MD 20892-1882, USA.
Caron A Lyman
Shyam Kottilil
Hee Sup Kim
Emmanuel Roilides
Jun Yang
Brandie Fullmer
Richard Lempicki
Thomas J Walsh
National Institutes of Health · USScience Applications International Corporation (United States) · USNational Institute of Allergy and Infectious Diseases · US

Funding

Treatment of Infections in Immunocompromised Children with Cancer, HematopoieticZ01SC006830 · SC · DIVISION OF CLINICAL SCIENCES - NCI · PI WALSH, THOMAS J. · 1996 to 2008
$5.8M
Therapeutic Strategies for the Management of HCV/HIV co- infectionZIAAI000390 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI FAUCI, ANTHONY S. · 2009 to 2014
$4.2M
Treatment of Infections in Immunocompromised ChildrenZIASC006830 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI WALSH, THOMAS J. · 2009 to 2009
$2.4M
Role Of Innate Immunity In The Initiation And Pathogenesis Of HIV InfectionZ01AI000886 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI FAUCI, ANTHONY S. · 2001 to 2008
$1.6M
Role Of Innate Immunity In The Initiation And Pathogenesis Of HIV InfectionZIAAI000886 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI FAUCI, ANTHONY S. · 2009 to 2009
$528k
Therapeutic Strategies for the Management of HCV/HIV co- infectionZ01AI000390 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI FAUCI, ANTHONY S. · 1985 to 2008
$348k
Intramural NIH HHS
6 · The paper itself

Abstract

Aspergillus fumigatus induces the release of innate immune-related molecules from phagocytic cells early in the course of infection. Little is known, however, about the complex expression profiles of the multiple genes involved in this response. We therefore investigated the kinetics of early gene expression in human monocytes (HMCs) infected with conidia of A. fumigatus using DNA microarray analysis. Total RNA from HMCs at 0, 2, 4, and 6 h was extracted, linearly amplified, hybridized onto Affymetrix HG133 Plus 2.0 gene chips, and analyzed with an Affymetrix scanner. Changes in gene expression were calculated as a ratio of those expressed by infected versus control HMCs. Aspergillus fumigatus induced differential regulation of expression in 1,827 genes (P < 0.05). Genes encoding cytokines and chemokines involved in host defense against A. fumigatus, including interleukin-1beta (IL-1beta), IL-8, CXCL2, CCL4, CCL3, and CCL20, as well as the opsonin long pentraxin 3, were up-regulated during the first 2 to 6 h, coinciding with an increase in phagocytosis. Simultaneously, genes encoding CD14, ficolin1, and MARCO were down-regulated, and genes encoding IL-10 and matrix metalloproteinase 1 were up-regulated. Up-regulation of the genes encoding heat shock proteins 40 and 110 and connexins 26 and 30 may point to novel molecules whose role in the pathogenesis of aspergillosis has not been previously reported. Verification of the transcriptional profiling was obtained for selected genes by reverse transcription-PCR and enzyme immunoassay. Thus, A. fumigatus conidia induced a coordinated expression of genes important in host defense and immunomodulation.

Indexed as

GenomicsOligonucleotide Array Sequence AnalysisAspergillosisAspergillus fumigatusCells, CulturedCell SurvivalCytokinesGene Expression ProfilingHumansImmunity, InnateKineticsMatrix Metalloproteinase 1MonocytesProstaglandinsReceptors, CytokineReceptors, Pattern RecognitionCytokinesMatrix Metalloproteinase 1ProstaglandinsReceptors, CytokineReceptors, Pattern Recognition

Identifiers

PMID16552065
PMCPMC1418921
OpenAlexW2111587762

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.