Evidence map›Paper›PMID 16549767›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Alternative mutations of a positively selected residue elicit gain or loss of functionalities in enzyme evolution.

Malena A Norrgård, Ylva Ivarsson, Kaspars Tars, Bengt Mannervik

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Glutathione Transferases as Efficient Ketosteroid Isomerases.Frontiers in molecular biosciences · 2021
    Review
  2. Article
  3. Article
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  5. Prediction of substrates for glutathione transferases by covalent docking.Journal of chemical information and modeling · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Malena A NorrgårdDepartment of Biochemistry and Organic Chemistry, Uppsala University, Biomedical Center, Box 576, SE-75123 Uppsala, Sweden.
Ylva Ivarsson
Kaspars Tars
Bengt Mannervik

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

All molecular species in an organism are connected physically and functionally to other molecules. In evolving systems, it is not obvious to what extent functional properties of a protein can change to selective advantage and leave intact favorable traits previously acquired. This uncertainty has particular significance in the evolution of novel pathways for detoxication, because an organism challenged with new xenobiotics in the environment may still require biotransformation of previously encountered toxins. Positive selection has been proposed as an evolutionary mechanism for facile adaptive responses of proteins to changing conditions. Here, we show, by saturation mutagenesis, that mutations of a hypervariable residue in human glutathione transferase M2-2 can differentially change the enzyme's substrate-activity profile with alternative substrates and, furthermore, enable or disable dissimilar chemical reactions. Crystal structures demonstrate that activity with epoxides is enabled through removal of steric hindrance from a methyl group, whereas activities with an orthoquinone and a nitroso donor are maintained in the variant enzymes. Given the diversity of cellular activities in which a single protein can be engaged, the selective transmutation of functional properties has general significance in molecular evolution.

Indexed as

Evolution, MolecularEnzyme StabilityEpoxy CompoundsGenetic VariationGlutathione TransferaseHumansModels, MolecularMolecular Sequence DataMolecular StructureMutationProtein Structure, TertiarySerineSubstrate SpecificityTemperatureThreonineEpoxy CompoundsGlutathione TransferaseSerineThreonine

Identifiers

PMID16549767
PMCPMC1458763

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.