Evidence map›Paper›PMID 16547047›Full record

ArticleJournal of bacteriology2006

Characterizing the effect of the Staphylococcus aureus virulence factor regulator, SarA, on log-phase mRNA half-lives.

Corbette Roberts, Kelsi L Anderson, Ellen Murphy, Steven J Projan, William Mounts, Barry Hurlburt, Mark Smeltzer, Ross Overbeek, Terrence Disz, Paul M Dunman

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 110 citations in OpenAlex.

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  5. Thirty Years of sRNA-Mediated Regulation inInternational journal of molecular sciences · 2022
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  6. Comparative Transcriptomic Analysis ofFoods (Basel, Switzerland) · 2022
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  9. The Impacts ofInfection and immunity · 2020
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  12. Assessment ofFrontiers in microbiology · 2018
    Article
  13. Article
  14. Article
  15. Article
  16. Article
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  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Corbette RobertsDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE 68198-6495, USA.
Kelsi L Anderson
Ellen Murphy
Steven J Projan
William Mounts
Barry Hurlburt
Mark Smeltzer
Ross Overbeek
Terrence Disz
Paul M Dunman
University of Nebraska Medical Center · USArgonne National Laboratory · USPearl River Community College · USSouthern Regional Research Center · USUniversity of Arkansas for Medical Sciences · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial pathogens regulate virulence factor expression at both the level of transcription initiation and mRNA processing/turnover. Within Staphylococcus aureus, virulence factor transcript synthesis is regulated by a number of two-component regulatory systems, the DNA binding protein SarA, and the SarA family of homologues. However, little is known about the factors that modulate mRNA stability or influence transcript degradation within the organism. As our entree to characterizing these processes, S. aureus GeneChips were used to simultaneously determine the mRNA half-lives of all transcripts produced during log-phase growth. It was found that the majority of log-phase transcripts (90%) have a short half-life (<5 min), whereas others are more stable, suggesting that cis- and/or trans-acting factors influence S. aureus mRNA stability. In support of this, it was found that two virulence factor transcripts, cna and spa, were stabilized in a sarA-dependent manner. These results were validated by complementation and real-time PCR and suggest that SarA may regulate target gene expression in a previously unrecognized manner by posttranscriptionally modulating mRNA turnover. Additionally, it was found that S. aureus produces a set of stable RNA molecules with no predicted open reading frame. Based on the importance of the S. aureus agr RNA molecule, RNAIII, and small stable RNA molecules within other pathogens, it is possible that these RNA molecules influence biological processes within the organism.

Indexed as

Gene Expression Regulation, BacterialRNA StabilityBacterial ProteinsHalf-LifeRNA, BacterialRNA, MessengerStaphylococcus aureusVirulence FactorsBacterial ProteinsRNA, BacterialRNA, MessengerSarA protein, Staphylococcus aureusVirulence Factors

Identifiers

PMID16547047
PMCPMC1428411
OpenAlexW2148253865

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.