Evidence map›Paper›PMID 16547032›Full record

ArticleJournal of bacteriology2006

Role of oxyR in the oral anaerobe Porphyromonas gingivalis.

Patricia I Diaz, Nada Slakeski, Eric C Reynolds, Renato Morona, Anthony H Rogers, Paul E Kolenbrander

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 84 citations in OpenAlex.

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  14. Interspecies Inhibition ofApplied and environmental microbiology · 2019
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  19. Genes Contributing toFrontiers in cellular and infection microbiology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Patricia I DiazNational Institutes of Health/NIDCR, Building 30, Room 310, 30 Convent Drive, Bethesda, MD 20892-4350, USA.
Nada Slakeski
Eric C Reynolds
Renato Morona
Anthony H Rogers
Paul E Kolenbrander
National Institutes of Health · USUniversity of Adelaide · AUUniversity of Melbourne · AU

Funding

Interactions Between Actinomyces And Other BacteriaZ01DE000273 · NIDCR · NATIONAL INSTITUTE OF DENTAL & CRANIOFACIAL RESEARCH · PI KOLENBRANDER, PAUL E · 1985 to 2008
$1.9M
Cell-cell Interactions Between Oral Actinomyces And Other BacteriaZIADE000273 · NIDCR · NATIONAL INSTITUTE OF DENTAL & CRANIOFACIAL RESEARCH · PI KOLENBRANDER, PAUL E · 2009 to 2009
$679k
Intramural NIH HHS
6 · The paper itself

Abstract

Porphyromonas gingivalis is an anaerobic microorganism that inhabits the oral cavity, where oxidative stress represents a constant challenge. A putative transcriptional regulator associated with oxidative stress, an oxyR homologue, is known from the P. gingivalis W83 genome sequence. We used microarrays to characterize the response of P. gingivalis to H2O2 and examine the role of oxyR in the regulation of this response. Most organisms in which oxyR has been investigated are facultative anaerobes or aerobes. In contrast to the OxyR-regulated response of these microorganisms to H2O2, the main feature of the response in P. gingivalis was a concerted up-regulation of insertion sequence elements related to IS1 transposases. Common OxyR-regulated genes such as dps and ahpFC were not positively regulated in P. gingivalis in response to H2O2. However, their expression was dependent on the presence of a functional OxyR, as revealed by microarray comparison of an oxyR mutant to the wild type. Phenotypic characterization of the oxyR mutant showed that OxyR plays a role in both the resistance to H2O2 and the aerotolerance of P. gingivalis. Escherichia coli and other bacteria with more complex respiratory requirements use OxyR for regulating resistance to H2O2 and use a separate regulator for aerotolerance. In P. gingivalis, the presence of a single protein combining the two functions might be related to the comparatively smaller genome size of this anaerobic microorganism. In conclusion, these results suggest that OxyR does not act as a sensor of H2O2 in P. gingivalis but constitutively activates transcription of oxidative-stress-related genes under anaerobic growth.

Indexed as

AnaerobiosisAntioxidantsBacterial ProteinsDNA-Binding ProteinsGene Expression ProfilingGene Expression Regulation, BacterialHydrogen PeroxideMolecular Sequence DataMouthMutagenesis, InsertionalPorphyromonas gingivalisAntioxidantsBacterial ProteinsDNA-Binding ProteinsDPS protein, BacteriaHydrogen Peroxide

Identifiers

PMID16547032
PMCPMC1428421
OpenAlexW2156898045

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.