Evidence map›Paper›PMID 16547026›Full record

ArticleJournal of bacteriology2006

Receptor-binding protein of Lactococcus lactis phages: identification and characterization of the saccharide receptor-binding site.

Denise M Tremblay, Mariella Tegoni, Silvia Spinelli, Valérie Campanacci, Stéphanie Blangy, Céline Huyghe, Aline Desmyter, Steve Labrie, Sylvain Moineau, Christian Cambillau

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 114 citations in OpenAlex.

  1. Article
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  5. Viral Genome Delivery Across Bacterial Cell Surfaces.Annual review of microbiology · 2024
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  12. Article
  13. Article
  14. Article
  15. Article
  16. Phage diversity, genomics and phylogeny.Nature reviews. Microbiology · 2020
    Review
  17. Article
  18. Article
  19. Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Denise M TremblayArchitecture et Fonction des Macromolécules Biologiques, UMR 6098 CNRS and Universités d'Aix-Marseille I & II, Campus de Luminy, case 932, 13288 Marseille CEDEX 09, France.
Mariella Tegoni
Silvia Spinelli
Valérie Campanacci
Stéphanie Blangy
Céline Huyghe
Aline Desmyter
Steve Labrie
Sylvain Moineau
Christian Cambillau
Architecture et Fonction des Macromolécules Biologiques · FRCentre National de la Recherche Scientifique · FRGroupe de Recherche en Économie Théorique et Appliquée · FRUniversité Laval · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phage p2, a member of the lactococcal 936 phage species, infects Lactococcus lactis strains by binding initially to specific carbohydrate receptors using its receptor-binding protein (RBP). The structures of p2 RBP, a homotrimeric protein composed of three domains, and of its complex with a neutralizing llama VH domain (VHH5) have been determined (S. Spinelli, A. Desmyter, C. T. Verrips, H. J. de Haard, S. Moineau, and C. Cambillau, Nat. Struct. Mol. Biol. 13:85-89, 2006). Here, we show that VHH5 was able to neutralize 12 of 50 lactococcal phages belonging to the 936 species. Moreover, escape phage mutants no longer neutralized by VHH5 were isolated from 11 of these phages. All of the mutations (but one) cluster in the RBP/VHH5 interaction surface that delineates the receptor-binding area. A glycerol molecule, observed in the 1.7-A resolution structure of RBP, was found to bind tightly (Kd= 0.26 microM) in a crevice located in this area. Other saccharides bind RBP with comparable high affinity. These data prove the saccharidic nature of the bacterial receptor recognized by phage p2 and identify the position of its binding site in the RBP head domain.

Indexed as

CarbohydratesAmino Acid SequenceAnimalsBacteriophage P2Binding SitesCamelids, New WorldLactococcus lactisModels, MolecularMutationNeutralization TestsPhylogenyProtein BindingProtein ConformationReceptors, Cell SurfaceViral ProteinsCarbohydratesReceptors, Cell SurfaceViral Proteins

Identifiers

PMID16547026
PMCPMC1428394
OpenAlexW2163668511

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.