Evidence map›Paper›PMID 16538400›Full record

ArticleExtremophiles : life under extreme conditions2006

Diversity of actinomycetes isolated from Challenger Deep sediment (10,898 m) from the Mariana Trench.

Wasu Pathom-Aree, James E M Stach, Alan C Ward, Koki Horikoshi, Alan T Bull, Michael Goodfellow

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Article in Extremophiles : life under extreme conditions, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

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  8. Alternaria alternata (SDHY01/02), a fungus associated with Lamellodysidea herbacea: its anticancer potential and responsible constituent(s).International microbiology : the official journal of the Spanish Society for Microbiology · 2023
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  14. Comparative Genomic Analysis ofFrontiers in microbiology · 2021
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  19. Whole Genome Sequence ofMarine drugs · 2020
    Article
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Wasu Pathom-AreeDivision of Biology, Faculty of Science, Agriculture and Engineering, University of Newcastle, Newcastle upon Tyne, NE1 7RU, UK. Wasu@chiangmai.ac.th
James E M Stach
Alan C Ward
Koki Horikoshi
Alan T Bull
Michael Goodfellow

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thirty-eight actinomycetes were isolated from sediment collected from the Mariana Trench (10,898 m) using marine agar and media selective for actinomycetes, notably raffinose-histidine agar. The isolates were assigned to the class Actinobacteria using primers specific for members of this taxon. The phylogenetic analysis based on 16S rRNA gene sequencing showed that the isolates belonged to the genera Dermacoccus, Kocuria, Micromonospora, Streptomyces, Tsukamurella and Williamsia. All of the isolates were screened for genes encoding nonribosomal peptide and polyketide synthetases. Nonribosomal peptide synthetase sequences were detected in more than half of the isolates and polyketide synthases type I (PKS-I) were identified in five out of 38 strains. The Streptomyces isolates produced several unusual secondary metabolites, including a PKS-I associated product. In initial testing for piezotolerance, the Dermacoccus strain MT1.1 grew at elevated hydrostatic pressures.

Indexed as

GeographyActinobacteriaGenetic VariationGeologic SedimentsOceans and SeasPeptide SynthasesPhylogenyPolyketide SynthasesPressurenon-ribosomal peptide synthasePeptide SynthasesPolyketide Synthases

Identifiers

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.