Evidence map›Paper›PMID 16537506›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Human centromeric chromatin is a dynamic chromosomal domain that can spread over noncentromeric DNA.

Ai Leen Lam, Christopher D Boivin, Caitlin F Bonney, M Katharine Rudd, Beth A Sullivan

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
22.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 141 citations in OpenAlex.

  1. Article
  2. The dynamic centromere.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  3. Article
  4. Article
  5. Centromere Identity and the Regulation of Chromosome Segregation.Frontiers in cell and developmental biology · 2022
    Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Review
  13. Alpha satellite DNA biology: finding function in the recesses of the genome.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2018
    Review
  14. Comparison ofThe Plant cell · 2018
    Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Review
  20. Human centromere repositioning within euchromatin after partial chromosome deletion.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2016
    Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ai Leen LamDepartment of Genetics and Genomics, Boston University School of Medicine, Boston, MA 02118, USA.
Christopher D Boivin
Caitlin F Bonney
M Katharine Rudd
Beth A Sullivan
Boston University · USDuke University · US

Funding

Organization and Regulation of Eukaryotic CentromeresR01GM069514 · NIGMS · DUKE UNIVERSITY · PI SULLIVAN, BETH A · 2004 to 2009
$1.5M
NIGMS NIH HHS GM069514NIGMS NIH HHS R01 GM069514
6 · The paper itself

Abstract

Human centromeres are specialized chromatin domains containing the centromeric histone H3 variant CENP-A. CENP-A nucleosomes are interspersed with nucleosomes containing histone H3 dimethylated at lysine 4, distinguishing centromeric chromatin (CEN chromatin) from flanking heterochromatin that is defined by H3 lysine 9 methylation. To understand the relationship between chromatin organization and the genomic structure of human centromeres, we compared molecular profiles of three endogenous human centromeres, defined by uninterrupted higher-order alpha-satellite DNA, with human artificial chromosomes that contain discontinuous blocks of higher-order alpha-satellite DNA and noncentromeric DNA. The underlying sequence did not correlate with chromatin states, because both higher-order alpha-satellite DNA and noncentromeric DNA were enriched for modifications that define CEN chromatin, euchromatin, and heterochromatin. Human artificial chromosomes were also organized into distinct domains. CENP-A and heterochromatin were assembled over noncentromeric DNA, including the gene blasticidin, into nonoverlapping domains. Blasticidin transcripts were enriched at sites of CENP-A binding but not at H3 methylated at lysine 9, indicating that formation of CEN chromatin within a repetitive DNA environment does not preclude gene expression. Finally, we tested the role of centric heterochromatin as a centromeric boundary by increasing CENP-A dosage to expand the CEN domain. In response, H3 lysine 9 dimethylation, but not trimethylation, was markedly decreased at all centromeres examined. We propose that human centromere regions normally exist in a dynamic state in which a regional boundary, defined by H3 lysine 9 dimethylation, separates CEN chromatin from constitutive heterochromatin.

Indexed as

AutoantigensCell LineCentromereCentromere Protein AChromatinChromosomal Proteins, Non-HistoneChromosomes, Artificial, HumanChromosomes, HumanDNADNA, SatelliteHeterochromatinHumansImmunoprecipitationIn Situ Hybridization, FluorescencePolymerase Chain ReactionTranscription, GeneticAutoantigensCENPA protein, humanCentromere Protein AChromatinChromosomal Proteins, Non-HistoneDNADNA, SatelliteHeterochromatin

Identifiers

PMID16537506
PMCPMC1449668
OpenAlexW1980361305

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.