Evidence map›Paper›PMID 16537413›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Role of the lytic repressor in prophage induction of phage lambda as analyzed by a module-replacement approach.

Shota Atsumi, John W Little

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Control of λ LysogenicACS synthetic biology · 2022
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. YMC-2011, a Temperate Phage of Streptococcus salivarius 57.I.Applied and environmental microbiology · 2017
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Shota AtsumiDepartment of Biochemistry and Molecular Biophysics, University of Arizona, Life Sciences South Building, 1007 East Lowell Street, Tucson, AZ 85721, USA.
John W Little
Institute of Molecular Biology and Biophysics · RU

Funding

GENE REGULATION IN PHAGES LAMBDA AND HK022R01GM024178 · NIGMS · UNIVERSITY OF ARIZONA · PI LITTLE, JOHN W. · 1985 to 2010
$2.0M
NIGMS NIH HHS GM 24178NIGMS NIH HHS R01 GM024178
6 · The paper itself

Abstract

Using a module exchange approach, we have tested a long-standing model for the role of Cro repressor in lambda prophage induction. This epigenetic switch from lysogeny to the lytic state occurs on activation of the host SOS system, which leads to specific cleavage of CI repressor. It has been proposed that Cro repressor, which operates during lytic growth and which we shall term the lytic repressor, is crucial to prophage induction. In this view, Cro binds to the O(R)3 operator, thereby repressing the cI gene and making the switch irreversible. Here we tested this model by replacing lambda Cro with a dimeric form of Lac repressor and adding several lac operators. This approach allowed us to regulate the function of the lytic repressor at will and to prevent it from repressing cI, because lac repressor could not repress P(RM) in our constructs. Repression of cI by the lytic repressor was not required for prophage induction to occur. However, our evidence suggests that this binding can make induction more efficient, particularly at intermediate levels of DNA damage that otherwise cause induction of only a fraction of the population. These results indicate that this strategy of module exchange will have broad applications for analysis of gene regulatory circuits.

Indexed as

Gene Expression Regulation, ViralBacterial ProteinsBacteriophage lambdaDNA-Binding ProteinsEpigenesis, GeneticLac RepressorsLysogenyMutationPromoter Regions, GeneticProphagesRepressor ProteinsViral ProteinsViral Regulatory and Accessory ProteinsVirus ActivationBacterial ProteinsDNA-Binding ProteinsLac Repressorsphage repressor proteinsRepressor ProteinsViral ProteinsViral Regulatory and Accessory Proteins

Identifiers

PMID16537413
PMCPMC1450210
OpenAlexW2084821299

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.