Evidence map›Paper›PMID 16537383›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

The DNA repair genes XPB and XPD defend cells from retroviral infection.

Kristine Yoder, Alain Sarasin, Kenneth Kraemer, Michael McIlhatton, Frederic Bushman, Richard Fishel

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
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  9. Review
  10. Article
  11. Article
  12. Article
  13. The essential and multifunctional TFIIH complex.Protein science : a publication of the Protein Society · 2018
    Review
  14. Article
  15. DNA double-strand break repair in Penaeus monodon is predominantly dependent on homologous recombination.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017
    Article
  16. Article
  17. Review
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Kristine YoderDepartment of Molecular Virology, and Ohio State University Comprehensive Cancer Center, Ohio State University College of Medicine, Columbus, OH 43210, USA.
Alain Sarasin
Kenneth Kraemer
Michael McIlhatton
Frederic Bushman
Richard Fishel
The Ohio State University · USInstitut Gustave Roussy · FRNational Cancer Institute · USUniversity of Pennsylvania · US

Funding

TRAINING PROGRAM IN BIOMOLECULAR SIGNAL TRANSDUCTIONT32DK007705 · NIDDK · THOMAS JEFFERSON UNIVERSITY · PI BENOVIC, JEFFREY L · 1994 to 2008
$2.6M
RECOMBINATION/REPAIR COMPLEX IN HUMAN CELLSR01CA056542 · NCI · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI FISHEL, RICHARD · 1993 to 2005
$2.3M
NCI NIH HHS CA 56542NCI NIH HHS R01 CA056542NIDDK NIH HHS T32 DK007705NIDDK NIH HHS T32 DK 07705
6 · The paper itself

Abstract

Reverse transcription of retroviral RNA genomes produce a double-stranded linear cDNA molecule. A host degradation system prevents a majority of the cDNA molecules from completing the obligatory genomic integration necessary for pathogenesis. We demonstrate that the human TFIIH complex proteins XPB (ERCC3) and XPD (ERCC2) play a principal role in the degradation of retroviral cDNA. DNA repair-deficient XPB and XPD mutant cell lines exhibited an increase in transduction efficiency by both HIV- and Moloney murine leukemia virus-based retroviral vectors. Replicating Moloney murine leukemia virus viral production was greater in XPB or XPD mutant cells but not XPA mutant cells. Quantitative PCR showed an increase in total cDNA molecules, integrated provirus, and 2LTR circles in XPB and XPD mutant cells. In the presence of a reverse transcription inhibitor, the HIV cDNA appeared more stable in mutant XPB or XPD cells. These studies implicate the nuclear DNA repair proteins XPB and XPD in a cellular defense against retroviral infection.

Indexed as

AnimalsCell LineDNA-Binding ProteinsDNA, ComplementaryDNA HelicasesDNA RepairDNA, ViralHIVHumansKineticsMiceMoloney murine leukemia virusTranscription, GeneticVirus ReplicationXeroderma Pigmentosum Group D ProteinDNA-Binding ProteinsDNA, ComplementaryDNA HelicasesDNA, ViralXeroderma Pigmentosum Group D ProteinXPBC-ERCC-3 protein

Identifiers

PMID16537383
PMCPMC1450221
OpenAlexW2003730339

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.