Evidence map›Paper›PMID 16534841›Full record

ArticleWorld journal of gastroenterology2006

Identification of differently expressed genes in human colorectal adenocarcinoma.

Yao Chen, Yi-Zeng Zhang, Zong-Guang Zhou, Gang Wang, Zeng-Ni Yi

Open access · bronzeAbstract read
In one paragraph

Article in World journal of gastroenterology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. The Key Role of Calmodulin in KRAS-Driven Adenocarcinomas.Molecular cancer research : MCR · 2015
    Review
  3. The role of c2orf68 and PI3K/Akt/mTOR pathway in human colorectal cancer.Medical oncology (Northwood, London, England) · 2014
    Article
  4. Article
  5. Expression ofBiomedical reports · 2013
    Article
  6. Article
  7. SOX9 expression and its methylation status in gastric cancer.Virchows Archiv : an international journal of pathology · 2012
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yao ChenDepartment of Anatomy, Basic and Legal Medical Institute, West China Medical Center, Sichuan University, Chengdu 610041, Sichuan Province, China. xmxfh@263.net
Yi-Zeng Zhang
Zong-Guang Zhou
Gang Wang
Zeng-Ni Yi
West China Medical Center of Sichuan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo investigate the differently expressed genes in human colorectal adenocarcinoma.

methodsThe integrated approach for gene expression profiling that couples suppression subtractive hybridization, high-throughput cDNA array, sequencing, bioinformatics analysis, and reverse transcriptase real-time quantitative polymerase chain reaction (PCR) was carried out. A set of cDNA clones including 1260 SSH inserts amplified by PCR was arrayed using robotic printing. The cDNA arrays were hybridized with fluorescent-labeled probes prepared from RNA of human colorectal adenocarcinoma (HCRAC) and normal colorectal tissues.

resultsA total of 86 genes were identified, 16 unknown genes and 70 known genes. The transcription factor Somult9 influencing cell differentiation was downregulated. At the same time, Heat shock protein 10 KDis downregulated and Calmoulin is up-regulated.

conclusionDownregulation of heat shock protein 10 KD lost its inhibition of Ras, and then attenuated the Ras GTPase signaling pathway, increased cell proliferation and inhibited cell apoptosis. Down-regulated transcription factor Somult9 influences cell differentiation and cell-specific gene expression. Down-regulated Somult9 also decreases its binding to calmodulin, accumulates calmodulin as receptor-activated kinase and phosphorylase kinase due to the activation of PhK.

Indexed as

Gene Expression Regulation, NeoplasticAdenocarcinomaApoptosisCalmodulinCell ProliferationCell Transformation, NeoplasticColorectal NeoplasmsDNA, NeoplasmGene Expression ProfilingGenes, NeoplasmHigh Mobility Group ProteinsHumansNucleic Acid HybridizationOligonucleotide Array Sequence Analysisras GTPase-Activating Proteinsras ProteinsCalmodulinDNA, NeoplasmHigh Mobility Group Proteinsras GTPase-Activating Proteinsras ProteinsSOX9 protein, humanSOX9 Transcription FactorTranscription Factors

Identifiers

PMID16534841
PMCPMC4087892
OpenAlexW37775499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.