Evidence map›Paper›PMID 16533853›Full record

ArticleBiophysical journal2006

Analysis of puff dynamics in oocytes: interdependence of puff amplitude and interpuff interval.

Daniel Fraiman, Bernardo Pando, Sheila Dargan, Ian Parker, Silvina Ponce Dawson

Abstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Modeling IPBiophysical journal · 2023
    Article
  3. Changes in CaFrontiers in physiology · 2019
    Article
  4. Article
  5. Article
  6. Basis for a neuronal version of Grover's quantum algorithm.Frontiers in molecular neuroscience · 2014
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Calcium oscillations.Cold Spring Harbor perspectives in biology · 2011
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Imaging the quantal substructure of single IP3R channel activity during Ca2+ puffs in intact mammalian cells.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Daniel FraimanDepartamento de Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Buenos Aires, Argentina. dfraiman@df.uba.ar
Bernardo Pando
Sheila Dargan
Ian Parker
Silvina Ponce Dawson

Funding

Multi-scale observation and modeling of IP3/Ca signalingR01GM065830 · NIGMS · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI MAK, DON-ON DANIEL, PARKER, IAN · 2002 to 2017
$10.7M
NIGMS NIH HHS GM 65830NIGMS NIH HHS R01 GM065830
6 · The paper itself

Abstract

Puffs are localized Ca(2+) signals that arise in oocytes in response to inositol 1,4,5-trisphosphate (IP(3)). They are analogous to the sparks of myocytes and are believed to be the result of the liberation of Ca(2+) from the endoplasmic reticulum through the coordinated opening of IP(3) receptor/channels clustered at a functional release site. In this article, we analyze sequences of puffs that occur at the same site to help elucidate the mechanisms underlying puff dynamics. In particular, we show a dependence of the interpuff time on the amplitude of the preceding puff, and of the amplitude of the following puff on the preceding interval. These relationships can be accounted for by an inhibitory role of the Ca(2+) that is liberated during puffs. We construct a stochastic model for a cluster of IP(3) receptor/channels that quantitatively replicates the observed behavior, and we determine that the characteristic time for a channel to escape from the inhibitory state is of the order of seconds.

Indexed as

Models, BiologicalAnimalsBinding SitesCalciumCalcium ChannelsCalcium SignalingCytosolInositol 1,4,5-Trisphosphate ReceptorsIn Vitro TechniquesMicroscopy, ConfocalOocytesReceptors, Cytoplasmic and NuclearStatistical DistributionsStochastic ProcessesXenopus laevisCalciumCalcium ChannelsInositol 1,4,5-Trisphosphate ReceptorsReceptors, Cytoplasmic and Nuclear

Identifiers

PMID16533853
PMCPMC1459518

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.